Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g87 ATGAAATTTAATACCAATCGTGATTTAATGGCAAAATTCAAAATTCCCAGAAATTTTCAATTGGGTTTCTGCGGTTCACATTCTGGTAATAGTGCTTGCGCAACCCTAGTTCCTTCCTTCATGATACCAGGGACAAAATTTGTGAGGATGGAGTGTAATAAAGATGAGGCAATCAGGGCTAAAGGAATTTCTGAGAGGAAGATGACAGAAAAGGACATGGCTGGAGCAAGAAAGTTTGCTATGAAAGCCCAAAACTTGTATCCTGGGCTGGATGGTCTTCCTCAGCTGCTTGCAACCATTGATGTCTATCGTACCACTAATCCCAAGCCTGCACGGCCTCCTCCTAGTTCATCAAAACCTAATACATTTTGGACATTGTGTTCTCTCTGCAGAATGCAATATGAGTACCTTAGAACTTATCTGAACCATACACTTCTTTGCCCCAATTGCCATGAGCCTTTTCTTGCCTTTGAGACACCACCCCCACCTGCCTACACTCATGGCTCATACACTCCATGGACTGCCTACCAACAGAAACAGAGTTCAAATCAGCAGACAGGATCATACTCTAAATCAGACAGTGTCAGGACTACAGCTTCAGCTTCTTCATGTGCTCAATCTACTCATGGGTTTCAGCCAACATATGAGAAATTGGAGAGAGAACATAAGGAGGCAAAAACAACAGCCATGAAAGAGCCGACTCTTCCGAGGAAAACTACTGTTTCTAAGAAAAGTGGTGGGTTAGCTACTGGAGCTTCTAATATTGGTTCCAGTTCTGTATTCAAAGGAGAGAGCCCTGTTAAAAGAAGGCGCATAAATGAATTTAGTCCAAATGACAGTAGAAGTCAGGGAACAAATCAAATGAGAATGGAAAATGGAGGAGCTGGGATCGGGAATCTACCTGGTTTTCAAAATTGTAATTCTGAAATGGGGAGGATCAATGCTTCTAGAAGTACTAGGCTTGATATTAGAAGAGAGCCATCACAGCTCGAAATCCGAAATATGCTTATGGAGAAGGCAAGGAGAGAACTTGTTAAGAAGCTGAGTGAATGGACTACGGTGAGTGGTAGAAAAAGTAATGCCAGCAAGTCTAGTGAGTCTGCAGATACCATTAACAGAATCCGGCCCAAGACATTGTCTGCTACCCTTCCTACTGATGCTGATGAAAACGAAACTGAACCCATGACGATGAGCGTTCCAGATCCTGATATTCATGATTTTGACAAAGACCGTACTGAACTTTCATTTGGTGAAAACCAAGTTTGGGCTGCTTATGATGATGATGATGGGATGCCTCGTTATTATGCTATGATTCATAGTGTGATATCATTGAAGCCATTCAAGTTGCGCATTAGTTGGCTAAATGCTAAAAGCAACACTGAACTGGCTCCACTCAACTGGGTTGTTTCTGGTTTTTCCAAGACCAGTGGGGAAATCCAAATATATCCTAGAAAGGGAGACGTTTGGGCTCTTTATAGGAACTGGTCACCAGACTGGGATGAGCTTACCCCAGATGAAGTTATTCACAAGTATGAAATGGTGGAAGTAATCAAAGATTATAATGAGGATCAAGGAATTTTAAGGAAGAAGAGACGGCAGTGGCTTCTGAAAAAGGGAATGAAGAAGTGGAGGAAACATAACCAAAATGACAATGAAGTAATGTCACAGTATCATATTCAGACCAAACAGTTTTTTGTCAAAATCTTGAGCATGCCCTCAAGTCTCTCAGCTGTACCTCCAACTTCGGATCAGTCTGTCTCTTGCCTGTTTCTGCAATTTTTGAACAGTCTCTTGAATTTGCGACTTCTGAACACAGTTTTGAAGGTAAGCTTTCTTCGCTTACACGGGGAAGAGTGA 1857 42.0 MKFNTNRDLMAKFKIPRNFQLGFCGSHSGNSACATLVPSFMIPGTKFVRMECNKDEAIRAKGISERKMTEKDMAGARKFAMKAQNLYPGLDGLPQLLATIDVYRTTNPKPARPPPSSSKPNTFWTLCSLCRMQYEYLRTYLNHTLLCPNCHEPFLAFETPPPPAYTHGSYTPWTAYQQKQSSNQQTGSYSKSDSVRTTASASSCAQSTHGFQPTYEKLEREHKEAKTTAMKEPTLPRKTTVSKKSGGLATGASNIGSSSVFKGESPVKRRRINEFSPNDSRSQGTNQMRMENGGAGIGNLPGFQNCNSEMGRINASRSTRLDIRREPSQLEIRNMLMEKARRELVKKLSEWTTVSGRKSNASKSSESADTINRIRPKTLSATLPTDADENETEPMTMSVPDPDIHDFDKDRTELSFGENQVWAAYDDDDGMPRYYAMIHSVISLKPFKLRISWLNAKSNTELAPLNWVVSGFSKTSGEIQIYPRKGDVWALYRNWSPDWDELTPDEVIHKYEMVEVIKDYNEDQGILRKKRRQWLLKKGMKKWRKHNQNDNEVMSQYHIQTKQFFVKILSMPSSLSAVPPTSDQSVSCLFLQFLNSLLNLRLLNTVLKVSFLRLHGEE* 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 818276 823191 - Vvi17g87 Vvi17g87 778784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g87 618 PANTHER BNAC03G44070D PROTEIN 176 481 - -
Vvi17g87 618 PANTHER BNAC03G44070D PROTEIN 50 105 - -
Vvi17g87 618 PANTHER BNAC03G44070D PROTEIN 109 180 - -
Vvi17g87 618 PANTHER BNAC03G44070D PROTEIN 477 526 - -
Vvi17g87 618 MobiDBLite consensus disorder prediction 233 261 - -
Vvi17g87 618 MobiDBLite consensus disorder prediction 377 402 - -
Vvi17g87 618 Pfam Domain of unknown function (DUF3444) 475 526 IPR024593 -
Vvi17g87 618 Pfam Domain of unknown function (DUF3444) 394 478 IPR024593 -
Vvi17g87 618 MobiDBLite consensus disorder prediction 377 392 - -
Vvi17g87 618 PANTHER - 50 105 - -
Vvi17g87 618 PANTHER - 109 180 - -
Vvi17g87 618 PANTHER - 176 481 - -
Vvi17g87 618 PANTHER - 477 526 - -
Vvi17g87 618 MobiDBLite consensus disorder prediction 200 286 - -
Vvi17g87 618 MobiDBLite consensus disorder prediction 214 231 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g87 - - - vvi:100854062 805.053
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1262 Vvi17g87 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g87 . . . . . . . Bma12g01084 . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0013 . . . . . . . Blo15g00093 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0068891 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1