Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g870 ATGAAAAACAAAGAAAATTTTTGGGATTTAAATAAATTAGAAAATACAGGATTTAGCCAGTTTGAAGCAATTGGTAGCTTTATCATGGTAAGGGGCGTTGAATTTCATGTCACAGAACATTTAATTTCACAAAAAACATTTCTCTGTGCTCACTCACTCCACCCCTTCCCACGCATCACTACCTTCTCCGGTGCTCCATCTATTGCCTTGAGATTGCTTCAGATGGACAACGCCAACACCCGTTTCGATCCTGATCTGATTCATGCCATTTTCAAGCTTGTATGGTCCAGAACAGCCCTCGAGCGTGAAAAGAACGAAGGAGCCGATCCTCTGGAGTGCGAAGTAGGAGCTGCAACATCAAAGAAAAATCGGCCCACTTCAGCTAATGCAAATGCTCTAAAGCTGAGTTGTGAACTTCTGCGAGTCTTTGTCATAGAGGCCGTTGAACGTGCTGCCACAATTGCTGAAGCAGAGGGTGTTAATAAAATAGAAGCAACACATTTAGAGAGGATTCTTCCACAGTTACTTCTGGATTTTTGA 540 42.41 MKNKENFWDLNKLENTGFSQFEAIGSFIMVRGVEFHVTEHLISQKTFLCAHSLHPFPRITTFSGAPSIALRLLQMDNANTRFDPDLIHAIFKLVWSRTALEREKNEGADPLECEVGAATSKKNRPTSANANALKLSCELLRVFVIEAVERAATIAEAEGVNKIEATHLERILPQLLLDF* 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11538506 11549899 - Vvi17g870 Vvi17g870 779567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g870 179 Pfam CENP-S associating Centromere protein X 122 179 IPR018552 GO:0006281|GO:0051382
Vvi17g870 179 Gene3D - 138 179 - -
Vvi17g870 179 PANTHER CENTROMERE PROTEIN X 76 179 IPR018552 GO:0006281|GO:0051382
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g870 K15360 STRA13, CENPX, MHF2; centromere protein X - vvi:100253596 207.994
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g870 . . . . . . . . . . Cma10g00081 . Car10g00072 . . . . Bhi02g00578 . . . Hepe09g0083 . . Cla06g01713 Cam06g1902 Cec06g1952 Cco06g1955 Clacu06g1858 Cmu06g1800 Cre06g2614 . . . . . . . . . . . . Bpe07g00866 . . . . Cmo10g00082 . . . . . . . . . . . . . . . . . . . . . Lsi06g01608 Csa01g00090 . Cme02g02030
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014149 0 2 0 0 1 0 1 1 0 1 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 23