Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g871 ATGGAGGACCCATCATTGCTCGCAACTGCCGATTCTACTTTACCGGAGCAGATACTCCCCACTTCCGACACAAGTATTAACTCTGAAACCCCTTCTACCTCCACACTCTCACAGGAAACTACAAGCTTCACTGCTAGTCTACAAAGTCGCTCTCCCGAATCCCGAAACGTAGTCGTTTCTCACCTCTGCGTCTCCTCCCTCAGAACCTTGACCCCTCATATCAGCTGCCTCGCCGTCCATGAAAAGTTCCTCTATGCTGCCTCCGGCGAAGATATCCACGTCTACGATTTAACTACCCACACCCACATCGACACTTTCAGAAACAACAAGCCCACTTCTGGTTCAGTCAAGTCCATCGCATTCCACGAAGGAAAGATCTTCACCGCTCATCAGGATTCCAAGATTAGAGTGTGGCGGATCACGGCCTCCAAACGCCACCGCCTTATCTCTACTCTCCCCACCGTTAAAGACTTCTTGCGCCGCTCCATCCTCCCGAAGAACTACGTCCGGGTCCGGCGGCACAAGAAGCGGCTCTGGATCGAGCACAACGACGCCGTTTCGGGCCTGGCCATGGCCGAGGGTTTCATGTACTCAGCTTCGTGGGACAAGAGCTTCAAGATATGGAGAACATCGGACCTCCGCTGCGTCGAGTCTGTCAAAGCCCACGACGACGCTGTCAACGCCGTCGCCGTCTCCGCCTCTGGCACCGTCTATACTGCCTCCGCAGACGGGTGCATCAGGGTTTGGGAAAGAACCGGAGAAGAGAGAACCCACACGCTGATAACCACCCTAGAGAAGCACAAGTCTACGGTGAATGCGCTCGCATTGAGCGGGGATGGATCCTCACTGTTCTCCGGCGGTTGTGAGAGTTGGATCTTGGTCTGGGAGAGGGAAGAGAGCGCCAATCACATGGCCGCGACACAAGCCCTGGTGGGCCACACTGGACCCGTACTATGCTTAATCACCGTCAACAACATGATAATCAGTGGGTCCTCTGATCGGACGGTCAGGATTTGGCGCCCTGGGGTGGATGGAAGATATCACTGTACACTAATGTTGGAGGGACATGTAAAGCCGGTGAAGTCGTTGGTGGCAGTTTCCAGTGGCACCTCGTACGACGTCGTATCGATTTGTAGCGGAAGCCTAGATGGCGAGATTAAGGTTTGGGAGGTCTCAGCTGCTGCGTTTGATGCTAAAAGCTGA 1203 54.36 MEDPSLLATADSTLPEQILPTSDTSINSETPSTSTLSQETTSFTASLQSRSPESRNVVVSHLCVSSLRTLTPHISCLAVHEKFLYAASGEDIHVYDLTTHTHIDTFRNNKPTSGSVKSIAFHEGKIFTAHQDSKIRVWRITASKRHRLISTLPTVKDFLRRSILPKNYVRVRRHKKRLWIEHNDAVSGLAMAEGFMYSASWDKSFKIWRTSDLRCVESVKAHDDAVNAVAVSASGTVYTASADGCIRVWERTGEERTHTLITTLEKHKSTVNALALSGDGSSLFSGGCESWILVWEREESANHMAATQALVGHTGPVLCLITVNNMIISGSSDRTVRIWRPGVDGRYHCTLMLEGHVKPVKSLVAVSSGTSYDVVSICSGSLDGEIKVWEVSAAAFDAKS* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11592927 11594130 - Vvi17g871 Vvi17g871 779568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g871 400 CDD WD40 66 390 - -
Vvi17g871 400 PANTHER F21J9.19 21 394 - -
Vvi17g871 400 MobiDBLite consensus disorder prediction 10 50 - -
Vvi17g871 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Vvi17g871 400 MobiDBLite consensus disorder prediction 1 50 - -
Vvi17g871 400 ProSitePatterns Trp-Asp (WD) repeats signature. 377 391 IPR019775 -
Vvi17g871 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 339 - -
Vvi17g871 400 SUPERFAMILY WD40 repeat-like 73 392 IPR036322 GO:0005515
Vvi17g871 400 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 21 394 IPR045182 -
Vvi17g871 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 296 - -
Vvi17g871 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 259 IPR001680 GO:0005515
Vvi17g871 400 Gene3D - 40 160 IPR015943 GO:0005515
Vvi17g871 400 Pfam WD domain, G-beta repeat 214 249 IPR001680 GO:0005515
Vvi17g871 400 Pfam WD domain, G-beta repeat 310 339 IPR001680 GO:0005515
Vvi17g871 400 Pfam WD domain, G-beta repeat 349 389 IPR001680 GO:0005515
Vvi17g871 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 250 - -
Vvi17g871 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 339 IPR001680 GO:0005515
Vvi17g871 400 Gene3D - 167 255 IPR015943 GO:0005515
Vvi17g871 400 PRINTS G protein beta WD-40 repeat signature 237 251 IPR020472 -
Vvi17g871 400 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Vvi17g871 400 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
Vvi17g871 400 SMART WD40_4 99 139 IPR001680 GO:0005515
Vvi17g871 400 SMART WD40_4 257 296 IPR001680 GO:0005515
Vvi17g871 400 SMART WD40_4 303 340 IPR001680 GO:0005515
Vvi17g871 400 SMART WD40_4 60 96 IPR001680 GO:0005515
Vvi17g871 400 SMART WD40_4 212 250 IPR001680 GO:0005515
Vvi17g871 400 SMART WD40_4 346 390 IPR001680 GO:0005515
Vvi17g871 400 SMART WD40_4 172 209 IPR001680 GO:0005515
Vvi17g871 400 Gene3D - 256 399 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g871 - - - vvi:100246752 776.163
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g602 Vvi17g871 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g871 . . . . . Bpe13g00263 . . . . . . . . . . . Bhi02g00576 Tan09g2327 Cmetu02g1365 . . . . Cla06g01714 . . Cco06g1956 . . Cre06g2615 . . . . . . . . . . . . . . . . . Cmo10g00081 . . . . . . . . . . . . . . Cla01g01398 Cam01g1460 Cec01g1499 . Clacu01g1484 Cmu01g1379 Cre01g1294 . Csa01g00089 Chy02g02631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49