Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g872 ATGGGGGGTGTGACTTCATCCATGGCTGCCAAGTTGGCTTTCTTCCCACCAAACCCTCCATCCTACAAGCTAATTACGGACGATGCCACCGGCCTCTTGCTCTTCAACCACTTCCCCCACCGCGAAAACGTCGACATTTTGAAGCTTCCGACGCGCCGCGGCACCGAGATCGTGGCCCTCTATGTGCGGTACCCCATGGCCACCTCTACGCTGCTCTATTCCCATGGGAATGCGGCTGATATCGGCCAGATGTACGAGCTCTTCATCGAGTTGAGCATTCACTTGCGGGTTAATCTCATGGGGTATGATTATTCTGGCTATGGGCAGTCTTCAGGAAAGCCAAGTGAGCACAATACTTATGCAGATATTGAAGCTGCATATAAATGTCTTGAAGAAAGCTTTGGTGCGAAGCAGGAAGACATCATCCTTTATGGTCAGTCTGTTGGAAGTGGGCCTACTTTGGATCTTGCAGCTCGTTTGCCTCGATTAAGAGCTGTTGTTTTGCATAGTCCAATACTCTCAGGCTTACGAGTCATGTATCCTGTGAAACGTACATATTGGTTTGATATCTACAAGAATATTGACAAAATCCCATTGGTGCAGTGCCCTGTACTAGTGATTCATGGCACAGCTGATGAAGTTGTTGACTGCTCTCATGGCAAGCAGCTTTGGGAACTCTGCAAAGAGAAGTATGAACCCTTATGGTTAAAAGGGGGGAATCATTGTGATCTGGAGCTGTATCCAGAATACATTAAACATCTCAAGAAGTTCATATCCACAGTGGAAAAATCACCTTCCCGGAGGAGCAGTGCAAGGAGAAGTGTAGACCGGCCAGAATATTCCAGGAAGAGTACTGATTACAAACCAAGGCGGAGCACTGACAGGCCTGAAAAACTGAAACTCTATGACTACAAGTCTAATGATGTTGACAAGCTTGAGAAGTTAAGAACCTCTCTTGATCAGGTAGAGAGATCTCGGAGAAGCGTGGAATACAATGATAAGTCTCGGAGAAGCATCAACCAACAGTTGGAAAGAGCACGGAAGAGCGTGGATTGGTTGGACAGAATACGTGCCGGATAA 1080 47.13 MGGVTSSMAAKLAFFPPNPPSYKLITDDATGLLLFNHFPHRENVDILKLPTRRGTEIVALYVRYPMATSTLLYSHGNAADIGQMYELFIELSIHLRVNLMGYDYSGYGQSSGKPSEHNTYADIEAAYKCLEESFGAKQEDIILYGQSVGSGPTLDLAARLPRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKIPLVQCPVLVIHGTADEVVDCSHGKQLWELCKEKYEPLWLKGGNHCDLELYPEYIKHLKKFISTVEKSPSRRSSARRSVDRPEYSRKSTDYKPRRSTDRPEKLKLYDYKSNDVDKLEKLRTSLDQVERSRRSVEYNDKSRRSINQQLERARKSVDWLDRIRAG* 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11600215 11606424 + Vvi17g872 Vvi17g872 779569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g872 359 Gene3D alpha/beta hydrolase 44 258 IPR029058 -
Vvi17g872 359 Pfam Serine aminopeptidase, S33 70 175 IPR022742 -
Vvi17g872 359 MobiDBLite consensus disorder prediction 268 298 - -
Vvi17g872 359 PANTHER ALPHA/BETA-HYDROLASE SUPERFAMILY PROTEIN 1 299 - -
Vvi17g872 359 SUPERFAMILY alpha/beta-Hydrolases 24 261 IPR029058 -
Vvi17g872 359 MobiDBLite consensus disorder prediction 321 340 - -
Vvi17g872 359 PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 1 299 - -
Vvi17g872 359 Coils Coil 312 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g872 K01076 ABHD17; abhydrolase domain-containing protein 17 [EC:3.1.2.22] - vvi:100267319 681.019
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1257 Vvi17g872 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g872 . . . . Bpe12g00679 . . Bma12g01282 . . Cma10g00080 Cma11g00058 Car10g00071 Car11g00052 Sed08g0062 . . Bhi02g00575 Tan09g2328 Cmetu02g1969 . Hepe09g0082 . . . . . . . . . . Cone16ag0060 . . . . . . Blo13g00157 . . . Bpe07g01087 . . . . Cmo10g00080 Cmo11g00060 . . . . . Cpe18g00881 . . . . . . . . . . . . . . . Csa01g00088 Chy02g02632 Cme02g02031
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000437 3 6 3 3 4 4 5 4 4 4 3 4 5 4 4 4 4 6 3 4 4 4 4 4 4 2 4 6 4 4 121