Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g873 ATGTTTTTGTATTTGAAGTGTTTAATTTTTTCCCATTTATCCAAAGACACCATGTTTGCTTCTCATTTGCAGCTGTCCATATTTGGTGAATCAGCATGTACTATAATGGTCATAGAAGCATGTGGCACAATCACTTATTTGGCCACTGAAAAATCTTCACCCATCCCTCTCCGCACCCTCGAATCTGCTTGTGAACGAAACTATTCCTTTCTCAACACAATCTATTTCGATCGAAATATGTCACAGGATGAGGTGGCGGTTGATGCTATTAAACACGCTCTAAAGGCTCTGCGGAAGCGGCATTTGCTAGAGGAAGGCGCTCATGCTCCGGCTATCGTAGCTCTTTCCAAGCCTTTTATTTATCAGGGATCTGAATGGAAAGATAAAGCAGAAAATCTTGAAGTGGAACTACAGCAATGTTACAGAGCTCAAGCTAGATTATCAGAACAGCTTGTGGTGGAAGTGGCTGAATGCAGAGCTTCAAAAGCCTTGGTTCAAGAGAAAGAAGCAATAATCAATGATATACAAAATGAGCTTACTAAAACAAGGGATGAATGCTTGCAACTAAAAGTTATTGTAGAAGAAAAGACTAAAGCTTTAGAATTAGTTATGAGTGAGAATCAGGAGCTTAAAGCACAGCTACAAGAGATGACTGTGAAAGCTAAGAATATAGAGGCTGAAAATAAGATGTTGATTGATCGCTGGATGTTGCAAAAGATGCAGGAGGCTGAACACCTGAATGAGGCTAATGCTCTTTATCAAGATTTTAAAGATCAGCTCAAGGCCAGTGGTATAGCACAACTTGCTCGGCAGCAAGTGGATGGTGTGGTACGCCAAAGTGAAGAAGGTGCCCAGTACTATGGGGAATCAACTGTTCCGAATACATGTAAGCACAGGATCCATGCCCATGAGGGTGGCTGTGCAGCTATATTGTTTGAGTACAACTCTGGCAATTTGATTAGTGGGGGACATGACCGGGCAGTCAAAATGTGGGATACAAACACTGGATCATTAACTCGCACTCTTTATGGTTGTGTGGGCTCTGTTCTTGATCTTGCTATTACACATGATAACAGATCCATAATTGCTGCAAGCAGCTCAAATAACTTGTGTGTATGGGATGTGAACTCAGGTCGGATCCGTCATACTCTTACAGGCCACATGGATAAAGTTTGTTCTGTAGATGTGAGCAAAATTTCAAGTCGTCATGTTGCAAGTGCAGCTTATGACCGTACTATAAAAGTTTGGGATTTGCAGAAAGGAAAACTACTTAGTGAAGTTGCTGCTCATTCACTTGCTATTACATCTATCTCTTTGTCTCGAAATGGGAGTGTGGTATTAACAAGTGGGAGAGACAACTTGCATAATTTATTTGATATGCGGTCTCTGGAAGTTTGTGGCACATTAAGAGCGAATGGAAACAGGGTGGCATCTAATTGGAGCCGATCCTGTATAAGTGCAGATGACAACTATGTTGCTGCTGGATCCACTGATGGATCTGTGCATATTTGGTCAATACTAACAGCAGAAATAGTGAGTACTCTAAAGGAACACACTGCTTCAGTTCTAAGTTGTTCATGGAGTGGACTTGGAAAACCTCTAGCCTCCTCTGATAAGAGTGGAATTGTTTATACATGGACATGA 1644 41.42 MFLYLKCLIFSHLSKDTMFASHLQLSIFGESACTIMVIEACGTITYLATEKSSPIPLRTLESACERNYSFLNTIYFDRNMSQDEVAVDAIKHALKALRKRHLLEEGAHAPAIVALSKPFIYQGSEWKDKAENLEVELQQCYRAQARLSEQLVVEVAECRASKALVQEKEAIINDIQNELTKTRDECLQLKVIVEEKTKALELVMSENQELKAQLQEMTVKAKNIEAENKMLIDRWMLQKMQEAEHLNEANALYQDFKDQLKASGIAQLARQQVDGVVRQSEEGAQYYGESTVPNTCKHRIHAHEGGCAAILFEYNSGNLISGGHDRAVKMWDTNTGSLTRTLYGCVGSVLDLAITHDNRSIIAASSSNNLCVWDVNSGRIRHTLTGHMDKVCSVDVSKISSRHVASAAYDRTIKVWDLQKGKLLSEVAAHSLAITSISLSRNGSVVLTSGRDNLHNLFDMRSLEVCGTLRANGNRVASNWSRSCISADDNYVAAGSTDGSVHIWSILTAEIVSTLKEHTASVLSCSWSGLGKPLASSDKSGIVYTWT* 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11606488 11620317 + Vvi17g873 Vvi17g873 779570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g873 547 Pfam WD domain, G-beta repeat 380 417 IPR001680 GO:0005515
Vvi17g873 547 Pfam WD domain, G-beta repeat 296 332 IPR001680 GO:0005515
Vvi17g873 547 Pfam WD domain, G-beta repeat 484 505 IPR001680 GO:0005515
Vvi17g873 547 Gene3D - 427 547 IPR015943 GO:0005515
Vvi17g873 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 427 462 IPR001680 GO:0005515
Vvi17g873 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 384 426 IPR001680 GO:0005515
Vvi17g873 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 341 IPR001680 GO:0005515
Vvi17g873 547 PANTHER AUTOPHAGY PROTEIN 16-LIKE 422 547 IPR045160 GO:0000045
Vvi17g873 547 PANTHER AUTOPHAGY PROTEIN 16-LIKE 81 421 IPR045160 GO:0000045
Vvi17g873 547 SMART WD40_4 420 459 IPR001680 GO:0005515
Vvi17g873 547 SMART WD40_4 462 505 IPR001680 GO:0005515
Vvi17g873 547 SMART WD40_4 335 374 IPR001680 GO:0005515
Vvi17g873 547 SMART WD40_4 293 332 IPR001680 GO:0005515
Vvi17g873 547 SMART WD40_4 377 417 IPR001680 GO:0005515
Vvi17g873 547 SMART WD40_4 508 547 IPR001680 GO:0005515
Vvi17g873 547 Pfam Autophagy protein 16 (ATG16) 127 247 IPR013923 -
Vvi17g873 547 ProSitePatterns Trp-Asp (WD) repeats signature. 319 333 IPR019775 -
Vvi17g873 547 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 384 422 - -
Vvi17g873 547 Coils Coil 130 150 - -
Vvi17g873 547 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 300 337 - -
Vvi17g873 547 Coils Coil 193 234 - -
Vvi17g873 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 515 547 IPR001680 GO:0005515
Vvi17g873 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 383 IPR001680 GO:0005515
Vvi17g873 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 486 514 IPR001680 GO:0005515
Vvi17g873 547 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Vvi17g873 547 PRINTS G protein beta WD-40 repeat signature 404 418 IPR020472 -
Vvi17g873 547 PRINTS G protein beta WD-40 repeat signature 492 506 IPR020472 -
Vvi17g873 547 ProSitePatterns Trp-Asp (WD) repeats signature. 404 418 IPR019775 -
Vvi17g873 547 CDD WD40 290 546 - -
Vvi17g873 547 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 515 547 - -
Vvi17g873 547 Coils Coil 165 185 - -
Vvi17g873 547 Gene3D - 155 426 IPR015943 GO:0005515
Vvi17g873 547 SUPERFAMILY WD40 repeat-like 293 546 IPR036322 GO:0005515
Vvi17g873 547 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 422 547 - -
Vvi17g873 547 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 81 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g873 K17890 ATG16L1; autophagy-related protein 16-1 - twl:119985989 731.095
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g873 . . Bda06g00626 . . . . Bma12g01063 . . . . . . Sed08g0061 . Cpe04g01594 Bhi02g00574 Tan09g2330 Cmetu06g0240 . Hepe09g0081 . . Cla06g01715 Cam06g1904 Cec06g1954 Cco06g1958 Clacu06g1860 Cmu06g1802 Cre06g2617 Cone2ag0942 Cone16ag0059 . . . . . . . Blo15g00241 . . Bpe07g00867 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01609 Csa01g00087 Chy02g02633 Cme02g02032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009836 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 3 1 32