Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g874 ATGGGAAAACTCGATTTAGAAACACAAAAGGATGATACATTAACAAGCAAACCAGAAGGAAATGAAAAAATAGAGAAGGATGATGTATCATCAACCAAACCTGAAGAAAGTGGGAAACCTGCAACTCCATCTGGGTCATTACGGTCGATTTTGAGATACTCGGACTGGAAGGACATGGTGTTGATGACACTGGGGACGTTTGGCTGTGTTGCAGACGGATTAACCATGTCAGCTATGATGCTGGTTATCAGCAAACTGATGAATGCTTACGCCGTTACATCTCTCTCCCTTGCAGACATAGATAAGTACGCATTGGCCTTACTCTATGTAGCACTTGGCATAGGTGCGGGTTCATTTCTAGAAGGATTTTGTTGGGCACGCACCGCAGAAAGGCAAACTTCTAGACTGCGCAGGAAATATTTACAAGCAGTTCTGCGGCAAGATGTTGGATTCTTCGAGAGAACTCATGGCGCATCCATGACCTCCCAAGTAGTCTCAAGTATTTCAACAGACATTCTTGTCATACAAGGAGTTCTCAGTGAGAAGCTTCCAAATTTCATCATGAATATAGCAATGTTCATCACATCTCAAATGACTGCTCTGTACCTCTGTTGGAGACTGGCTATTGTTGCCATTCCTGCACTTTCCATGTTGATTATTCCAGGAATAGTATATGGAAAGCTGTTATCAGGGCTTGGAGAGAAGATACAAGAAGCTTATTCTGTTGCTGGAGGAATTGTGGAGCAGGCAATATCATCAATCAGGACTGTTTATTCTTATGTTGGAGAGGAAAGAACAGTGAAAAGCTATTCAGTTGCACTGGAACCGATTTTAAAGCTAGGGATCAAACAAGGACTGATGAAGGGAATGGCCATTGGCAGCATAGGAGTTACATATGCCGTTTGGGCACTACAGGGGTGGTATGGGAGCATTTTGGTCACTGACAAAGGAGTTAAAGGTGGCAATGTTTTCACTACAGGAGTGTGCATAATATACGGAGGACTTGCTCTTGGCAGTTCTTTCCTCAATGTGAAGCACTTTACTGAAGCAAATGCAGCAGCTGCACTTATTTTAGAAATGATTGAGCGTGTACCAAGCATAGATTCTGCAGATCAACAAGGCAAAACCATCACCGAAGTCAAAGGTGAATTGGTGTTTGAGGAAATTGATTTTGCATATCCATCACGGCCAGGAAACTTAGTATTAAGAAAATTCAATCTTAAAGTGGTTGCTTGCCAGACTGTTGGATTGGTGGGTAGCAGTGGTTCAGGTAAATCTACTGTGATTAATTTGCTCCAAAGATTCTATGATCCTCTTGGGGGAGAGATACTGTTGGATGGGATTGGCATAAAAAGCCTTCAGCTAAAATGGTTACGAAGCCAGATGGGTCTAGTTGCCCAAGAGCCTATACTTTTTGCAACCACAGTCAAAGAGAATATTCTATTTGGAAAAGAGGAGGCCTCACAGGAGGAGATAGTTCAAGCAGCTAAAGCTGCCAATGCACATAACTTCATTTCACAACTACCCAATGGATATGACACCCTGGTAGGACAATTGGGTATTCAGATGTCTGAAGGGCAGAAACAAAGGATTTCCATTGCAAGGGCATTGCTAAGAGATCCAAGAATCCTGCTGCTTGATGAAGCCACTAGTGCATTGGATTCCCAGTCTGAAAAGGCTGTCCAGGATGCTTTCAATCAGGCATCATTAGGAAGAACCACTATAATTGTTGCACATCGCCTGTCTGCACTGCGTAATGCTGACTTGATTGCTGTTATTCAATCTGGAGAAGTAGTGGAAGCTGGTTCCCATGACCAACTTATACAAAACAGGCACGGGCCATACTCAGCAATGGTGCAGCTGCAGAAAACAACATTCATGAAAGATGAAATCATATCAGAGCCTAAAGGAAATGAAAGTCACAATTCCACCTCCACCACTGAAGAAGCTGCCCCCACTGCAGAAATAGCAAACAAATTGAAGTGGAAGCCAACCCTAGTCGGTTGCATTGGTGCTCTTATCTTTGGATTAGTTCAGCCAATGAGCTCTTTCTGCATGGGTGCACTTCTAGCTAACCTAACAAGAAGGGTCAGGGAGGCAAGCCTCACAAAGATCTTGACATTTGAGATCGAATGGTTTGATCAAGAACACAACAGCACTGGGGCTCTCTGTTCGAGATTATCTGTGGATTCGACCATGGCAAGAACTCTTGTTGCTGATCGGTTGTCACTGTTGACTCAAGCCATCTCTGCTGCAGCTTTAGCAGTTATTTTGGGTATGGTTTTAGCTTGGAAACTTGCCATTAGCAGTGAATTAGCAAGTGAGGCTGTTGGGAACCACAGAATCATTACTGCATTCTATTCTCAGGAAAAGGTTTTGTCACTTTTTGAGGTTACACAGAAAGATCCCAAGAATGAGAGCCTTAAACAATCTTGGTATGCTGGGCTTGGGCTATTTACCTCACAGTTCCTCACTTCTGGTAATATCGAATTTAAAGAGGTGGATTTCTTTTATCCAACAAGACCAAAACAGATGATATTGATGGGTGTAAGCCTAAAGGTTGATGCTGGAAAAGTAGTGGCATTAGTTGGCCAAAGTGGATCTGGAAAATCTACTGTCATCAGAATGATTGAGAGATTCTATGACCCATCAAAAGGATCTATTGAAGTTGATGGAATTGACATCAAACACTACAATCTAAGAGCTTTAAGGTTACATATTGCATTGGTAAGTCAGGAGCCCACTCTATTTGCAGGAACCATCCAGGAAAACATTGCATATGCGAAAGAGAATGCAAGTGAAGCTGAGATTATTGAAGCGGCCACTGTAGCAAATGCCCATGAATTTATAAGTTCCATGAAGGATGGTTATGCAACCTATTGTGGGGAAAGAGGTGTGCAACTATCAGGAGGGCAAAAGCAGAGATTAGCTCTTGCTCGAGCAATCTTGAAAAATCCTGCAATATTGCTTTTAGATGAGGCAACGAGTGCATTGGATGTCAAATTGGAGAGCCTTGTTCAAGATGCACTGGAGAAGACCATGGTTGGTCGGACATGCCTGGTTGTAGCTCATCGACTGTCCACAATTCAAAAATCAGATAAAATATCAGTGATTGATGATGGGAAGATTGTGGAAGAGGGGTCGCATGGTGAGCTACTTGCAAAGGGAGAAAAAGGTGCATATTTTTCACTTGTAAAACTCCAACAGCATGCCACCATGGAGAAGAGAGAGCTCAATTTAATTGGTAGGAACATCGAGCCATCCAAGGATGAATGA 3276 42.8 MGKLDLETQKDDTLTSKPEGNEKIEKDDVSSTKPEESGKPATPSGSLRSILRYSDWKDMVLMTLGTFGCVADGLTMSAMMLVISKLMNAYAVTSLSLADIDKYALALLYVALGIGAGSFLEGFCWARTAERQTSRLRRKYLQAVLRQDVGFFERTHGASMTSQVVSSISTDILVIQGVLSEKLPNFIMNIAMFITSQMTALYLCWRLAIVAIPALSMLIIPGIVYGKLLSGLGEKIQEAYSVAGGIVEQAISSIRTVYSYVGEERTVKSYSVALEPILKLGIKQGLMKGMAIGSIGVTYAVWALQGWYGSILVTDKGVKGGNVFTTGVCIIYGGLALGSSFLNVKHFTEANAAAALILEMIERVPSIDSADQQGKTITEVKGELVFEEIDFAYPSRPGNLVLRKFNLKVVACQTVGLVGSSGSGKSTVINLLQRFYDPLGGEILLDGIGIKSLQLKWLRSQMGLVAQEPILFATTVKENILFGKEEASQEEIVQAAKAANAHNFISQLPNGYDTLVGQLGIQMSEGQKQRISIARALLRDPRILLLDEATSALDSQSEKAVQDAFNQASLGRTTIIVAHRLSALRNADLIAVIQSGEVVEAGSHDQLIQNRHGPYSAMVQLQKTTFMKDEIISEPKGNESHNSTSTTEEAAPTAEIANKLKWKPTLVGCIGALIFGLVQPMSSFCMGALLANLTRRVREASLTKILTFEIEWFDQEHNSTGALCSRLSVDSTMARTLVADRLSLLTQAISAAALAVILGMVLAWKLAISSELASEAVGNHRIITAFYSQEKVLSLFEVTQKDPKNESLKQSWYAGLGLFTSQFLTSGNIEFKEVDFFYPTRPKQMILMGVSLKVDAGKVVALVGQSGSGKSTVIRMIERFYDPSKGSIEVDGIDIKHYNLRALRLHIALVSQEPTLFAGTIQENIAYAKENASEAEIIEAATVANAHEFISSMKDGYATYCGERGVQLSGGQKQRLALARAILKNPAILLLDEATSALDVKLESLVQDALEKTMVGRTCLVVAHRLSTIQKSDKISVIDDGKIVEEGSHGELLAKGEKGAYFSLVKLQQHATMEKRELNLIGRNIEPSKDE* 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11622795 11629827 - Vvi17g874 Vvi17g874 779571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g874 1091 CDD ABC_MTABC3_MDL1_MDL2 829 1068 - -
Vvi17g874 1091 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 384 620 IPR003439 GO:0005524
Vvi17g874 1091 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 826 1070 IPR039421 -
Vvi17g874 1091 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 692 768 IPR039421 -
Vvi17g874 1091 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 769 827 IPR039421 -
Vvi17g874 1091 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 72 691 IPR039421 -
Vvi17g874 1091 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 64 349 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi17g874 1091 SUPERFAMILY ABC transporter transmembrane region 662 826 IPR036640 GO:0005524|GO:0016021
Vvi17g874 1091 SMART AAA_5 411 597 IPR003593 -
Vvi17g874 1091 SMART AAA_5 856 1042 IPR003593 -
Vvi17g874 1091 MobiDBLite consensus disorder prediction 1 45 - -
Vvi17g874 1091 Pfam ABC transporter transmembrane region 672 768 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi17g874 1091 Pfam ABC transporter transmembrane region 63 326 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi17g874 1091 SUPERFAMILY ABC transporter transmembrane region 43 365 IPR036640 GO:0005524|GO:0016021
Vvi17g874 1091 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 829 1065 IPR003439 GO:0005524
Vvi17g874 1091 CDD ABC_MTABC3_MDL1_MDL2 385 622 - -
Vvi17g874 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 823 1068 IPR027417 -
Vvi17g874 1091 Gene3D ABC transporter type 1, transmembrane domain 50 768 IPR036640 GO:0005524|GO:0016021
Vvi17g874 1091 CDD ABC_6TM_Pgp_ABCB1_D1_like 62 357 - -
Vvi17g874 1091 Pfam ABC transporter 402 551 IPR003439 GO:0005524
Vvi17g874 1091 Pfam ABC transporter 848 996 IPR003439 GO:0005524
Vvi17g874 1091 Gene3D - 821 1079 IPR027417 -
Vvi17g874 1091 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 669 768 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi17g874 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 622 IPR027417 -
Vvi17g874 1091 ProSitePatterns ABC transporters family signature. 968 982 IPR017871 GO:0005524
Vvi17g874 1091 PANTHER TRANSPORTER FAMILY PROTEIN, PUTATIVE-RELATED 826 1070 - -
Vvi17g874 1091 PANTHER TRANSPORTER FAMILY PROTEIN, PUTATIVE-RELATED 769 827 - -
Vvi17g874 1091 PANTHER TRANSPORTER FAMILY PROTEIN, PUTATIVE-RELATED 72 691 - -
Vvi17g874 1091 PANTHER TRANSPORTER FAMILY PROTEIN, PUTATIVE-RELATED 692 768 - -
Vvi17g874 1091 MobiDBLite consensus disorder prediction 1 34 - -
Vvi17g874 1091 Gene3D - 374 623 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g874 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - vvi:100257018 1504.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g874 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000338 3 4 5 4 3 4 2 4 4 4 4 4 7 4 4 8 4 5 4 4 4 4 6 4 4 4 7 6 4 8 136