Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g875 ATGACTAACCATGAGTTCAGAAGCACTTATGCCGGCTCAAAGGTGAACCACCACAGGATGTTCCGAGGGAGCCAACATGCAGCTGGGAGCTTCATGTATGAGAAGGTAAAGAGTGTCCCACCATCTGTTGATTGGAGGAAGAAAGGTGCTGTCACACCCATCAAGGATCAAGGCCAATGCGGTAGTTGCTGGGCATTTTCAACGGTTGTGGCGGTTGAAGGAATCAACCATATTAAAACAAACAAACTAGTTTCTTTGTCTGAGCAAGAGTTGGTGGACTGTGACACTTCAGAAAACCAGGGATGCAATGGAGGCCTAATGGGATATGCCTTTGAATTCATCAAAGAAAAAGGGGGTATAACAACAGAGCAGAGCTACCCTTACACAGCTGAAGATGGAACTTGTGATGTGTCAAAGGTGAATTCGCCAGTAGTGTCTATTGATGGCCATGAAACCGTACCTCCTAACAATGAGGACGCTTTGCTAAAAGCAGCTGCAAACCAACCGATATCCGTTGCCATAGATGCTGGGGGTTCTGCCTTCCAGTTCTACTCTGAGGGGGTGTTTGCAGGAAGATGTGGTACAGACCTAGATCATGGGGTGGCAATTGTGGGCTATGGAACAACTCTTGATGGGACCAAATACTGGATTGTGAAGAACTCATGGGGAACTGATTGGGGAGAGAACGGTTATATCAGGATGAAGCGAGGCATCTCTGCTAAGGAAGGACTCTGCGGTATAGCAGTGGAAGCTTCATATCCCATCAAGAACTCCTCAACAAACCCTGTGGGAGCTCCATCCTCTCTCAAGGATGAGCTCTAA 822 47.45 MTNHEFRSTYAGSKVNHHRMFRGSQHAAGSFMYEKVKSVPPSVDWRKKGAVTPIKDQGQCGSCWAFSTVVAVEGINHIKTNKLVSLSEQELVDCDTSENQGCNGGLMGYAFEFIKEKGGITTEQSYPYTAEDGTCDVSKVNSPVVSIDGHETVPPNNEDALLKAAANQPISVAIDAGGSAFQFYSEGVFAGRCGTDLDHGVAIVGYGTTLDGTKYWIVKNSWGTDWGENGYIRMKRGISAKEGLCGIAVEASYPIKNSSTNPVGAPSSLKDEL* 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11632896 11634953 + Vvi17g875 Vvi17g875 779572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g875 273 Pfam Papain family cysteine protease 39 255 IPR000668 GO:0006508|GO:0008234
Vvi17g875 273 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 197 207 IPR025660 -
Vvi17g875 273 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 1 262 - -
Vvi17g875 273 Gene3D Cysteine proteinases 1 257 - -
Vvi17g875 273 CDD Peptidase_C1A 40 254 IPR039417 -
Vvi17g875 273 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 215 234 IPR025661 -
Vvi17g875 273 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 57 68 IPR000169 -
Vvi17g875 273 PRINTS Papain cysteine protease (C1) family signature 57 72 IPR000668 GO:0006508|GO:0008234
Vvi17g875 273 PRINTS Papain cysteine protease (C1) family signature 199 209 IPR000668 GO:0006508|GO:0008234
Vvi17g875 273 PRINTS Papain cysteine protease (C1) family signature 215 221 IPR000668 GO:0006508|GO:0008234
Vvi17g875 273 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 1 262 - -
Vvi17g875 273 SMART pept_c1 39 255 IPR000668 GO:0006508|GO:0008234
Vvi17g875 273 SUPERFAMILY Cysteine proteinases 1 256 IPR038765 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g875 K16292 CEP, CYSEP; KDEL-tailed cysteine endopeptidase [EC:3.4.22.-] - vvi:100250141 567.385
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g599 Vvi17g875 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g875 . Blo16g00242 . . . . Bma06g00236 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0184 . . . . . . Bda11g01632 . . Bpe15g00130 Bma03g01289 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000347 1 4 1 1 0 9 2 8 9 8 8 9 2 8 4 1 9 1 2 7 7 2 0 4 4 6 1 2 5 2 127