Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g877 ATGGCTAGCTCTTCACTTTCCCTCTTCTTCCTCTTCTCTCTCCTGTCTCCAATTCTCATTGCCTCCTCTCCGGTTCAGGACCCTGAACTGGTGATACAAGAAGTACATAGGAGCATCAATGAGTCAAGGAGGAACTTGGGGTATCTGTCTTGTGGGAGTGGGAACCCCATTGATGACTGCTGGAGGTGTAACGCCAATTGGGAGAAGAACCGGCAGAGCCTGGCTGATTGTGCAATTGGGTTTGGGAAGAATGCCATAGGTGGCAAGAACGGAAAGATTTACGTGGTCACAGACTCCAGTGATGATGATGTGGTGAATCCTAAGCCGGGGACTCTTCGGTATGCAGTCATCCAAGATGAGCCCTTGTGGATCATCTTTGCTCGGGACATGGTGATTAAGTTGAAGGAAGAGTTGATCATGAACTCCTTCAAGACCATTGATGGCAGGGGAGCTAGTGTTCACATTGCAGGTGGACCATGCATTACTATACAGTTTGTGACCAACATTATCATACATGGACTCAACATCCATGACTGCAAGCAAGGAGGGAATACTAATGTTAGAGACTCCCCAAGTCACTACGGGTTTAGGACGATATCAGACGGTGATGGGGTGTCCATCTTTGGTGGGAGCCATATCTGGGTGGACCACTGCTCACTCTCAAACTGCCATGATGGACTCATTGATGCCATCCATGGCTCCACTGCCATCACTATCTCAAACAATTACATGACTCACCATGATAAAGTCATGCTTTTGGGCCACAGTGATTCCTACACTCAGGACAAGAACATGCAAGTCACTATAGCCTTCAATCACTTTGGAGAAGGGCTTGTCCAAAGAATGCCAAGATGTAGACATGGATACTTCCATGTGGTAAACAATGACTACACCCATTGGGAAATGTATGCCATTGGAGGGAGTGCTGACCCAACCATCAACAGCCAAGGCAATAGGTTTCTTGCACCCAATGATAGATTCAGCAAAGAGGTGACCAAACATGAGGATGCACCAGAAAGTCAATGGAAGAACTGGAATTGGAGGTCAGAGGGAGACTTGATGTTAAATGGTGCATATTTCACACCATCAGGGGCAGGAGCCTCATCAAGTTATGCCAGGGCATCAAGCTTGGGGGCAAGACCATCTTCCTTGGTGGCTTCCATCACTGGGTCAGCAGGTGCACTTAGCTGCAAGAAAGGTTCTCGATGCTGA 1212 47.85 MASSSLSLFFLFSLLSPILIASSPVQDPELVIQEVHRSINESRRNLGYLSCGSGNPIDDCWRCNANWEKNRQSLADCAIGFGKNAIGGKNGKIYVVTDSSDDDVVNPKPGTLRYAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGLNIHDCKQGGNTNVRDSPSHYGFRTISDGDGVSIFGGSHIWVDHCSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFLAPNDRFSKEVTKHEDAPESQWKNWNWRSEGDLMLNGAYFTPSGAGASSSYARASSLGARPSSLVASITGSAGALSCKKGSRC* 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11674723 11676881 - Vvi17g877 Vvi17g877 779574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g877 403 Gene3D - 54 396 IPR012334 -
Vvi17g877 403 PANTHER PECTATE LYASE 9 400 - -
Vvi17g877 403 Pfam Pectate lyase 137 320 IPR002022 -
Vvi17g877 403 SUPERFAMILY Pectin lyase-like 40 397 IPR011050 -
Vvi17g877 403 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Vvi17g877 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Vvi17g877 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Vvi17g877 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Vvi17g877 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Vvi17g877 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Vvi17g877 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Vvi17g877 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Vvi17g877 403 PANTHER PECTATE LYASE 18-RELATED 9 400 IPR045032 GO:0030570
Vvi17g877 403 SMART amb_all 129 326 IPR002022 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g591 Vvi17g877 ECH
Vvi14g1252 Vvi17g877 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g877 K01728 - vvi:100243265 790.415