Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g878 ATGATGGATGGGCGAAGGCATTCTGTTGATATCCCTATTTCAAAAACTCTGGTGGCACTTAGGAGAGTGAGGTCACTGAGGGATCCATCCACTAACTCCATGAGTAAATTCTCTGCTTTGGTTGATAGTCTGAACTGGGAAACCAATTCAAGTAATGGGATTTCTCTGAGATTTGTAAATGGTTTTCAGGAAGGTGGCCCAGATAATAATGGTCTTTTGGGTTTAGAAAATTTTCCTGGACAAAGAGAGGAACTCTATGGTGGTTTGAGAAAACCTGACCCTAATACATCATTACTTGCAAATGAAGAGTCTAATGCTATTGATCATAATGATCGTGGATGTGGGATAAGGTGCTGCTGGTCAAGAACTCCGAGATTTAGAGAATCAAATCTTCTTTCAGATAAATGGAGCTGGAAATGCTTTAACAATGAAATTACTCCATATTCAGAAAGCCCTAGGAGTCTCAGTCAGAAATTCAGGCCAAAAGCTTTCAATGAGTTGGTGGGACAAAATGTAGTGGCAAGGTCTCTCTTGGGTGCCATCTCAAGAGGAAGGATAACCTCCTTTTATCTTTTTCATGGTCCTCGTGGTACGGGTAAAACTTCTGCCTCAAGGATTTTTGCAGCGGCATTGAATTGTCTGTCGCTTGAGGAGCATAGGCCATGTGGTCTATGCCGAGAATGTGTTTTGTTCTTTTCTGGAAGGAGTAGGGACAGTAAAGAGATAGATACTGTGAGAATTAATCAAACAGGTAGAATGAGATCCCTTATTAAGCATGCCATTGGCCGTCCTGTTTCCTCACGATTTAAGGTCTTCATAATTGATGAGTGCCATTTGTTGCGAGGGGAAACTTGGGCTACTGTTTTGAATAGCCTAGATGACCTTCCTCAACATGTTGTCTTCATAATGATCACTCCTAGCCTGGATAAGCTGCCACGGAGTGCAGTGTCACGGTCCCAAAGGTACCACTTTCCAAAGATAAAAGATGCTGATATTGCAAGCAAATTGGGGAGAATCTGTGTTGAAGAATGTCTCGAATTTGACCAGGTTGCTTTAGACTTCATTGCTGCTAAATCTAATGGTTCACTTCGGGATGCAGAGATGATGCTTGATCAGCTGAGCTTGCTTGGAAAAAGAATTACTATGTCCATGACCTATGAACTTATTGGAATTGTTTCTGATGATGAGTTGCTTGATTTACTGGATCTAGCTTTGTCATCTGACACCTCAAATACAGTTAGAAGGGCCAGGGAATTGATGAGATCAAGGATTGATCCTATGCAACTGATATCACAGCTAGCAAATCTCATAATGGATATTCTTGCTGGAAAATGCCAAGAAGGCACTTCTGAAGTTAGAAGAAATTTTTTTGAAGGACATACTTCTGAAGTGGACTTGCAGAAGCTTAGTCATGCATTGAAAATTCTTTCTGAAACTGAGAAACAATTGAGGGCATCAAAGAATCAAACAACGTGGCTAACTGTAGCTCTTCTACAGTTAAGCTCTGTGGAGTCTTCTTTCTTGGATGCAAATGATTCAAGGGCATTTTTGAGAACAGAGCATCCAAGAGGGGAAAACGTGAAGCGCCTTGTCACTTGTGCATGTGACAACAATAAACCACATATATGTGAAGTACAGGAGGATTGCAAAGGACAATTAGAATTTTTATGGAAGCAAGCTACTGAAATATGTCAATCCAGTTCACTCAAAAACTTTCTGAGGAAGCAAGGGAAGTTGTCTTCTGTCATTGTTAGCCAAGGTATGGCAGTAGCTGAACTGGAATTCCAGCATCCTGACTATGTTTCCAAGGCTGAGAAATCATGGAAACTGATTGCAAGCTCACTCCAGTCTATCCTGGGTTGTAATGTGGAGATTAGGATCAATCTTGCACCTTGCACTTCTGTGAAAGGGTATGCTAAAGTGAAGAAGCCATCCTTCAGTTTTTTCAGTTGTTCCCGCAGAATGCGACTTAAATCACATTCAACTTCTGAACATGGAAGTGATCAGTCTGATTGTTCTGATTTCACTTCTGAGAAAGCGATGATCAGGGACAAAACTATAGGAACTTGTTCGTCAGACTGTGGTTCTCAAGTGTCACATGTCTGCTATCTGAGAACGGAAGCGGCAAGGACTTTAAGAAATAGGGAAGGAAATGTGCTAGGCATTGGAACAATCACTCCTCACAGACCATTTCAAGATGAAATACCAAAGGGGACTGGATTTGAGGTTGGTTCTTCTAAGGAAGAGCAAAGCAGCTGTGGATGCCAGGAACCAGAGAATCAACCAAACTGTCTCTTCAACACTTTTGGACTCCATAAAAAGTTACGATCATCAGAGGCTTCTCAGATGACCTGTTTGAGGTACCAAGCACAAAACAAGCTTGCATTGTCTGTCCCCAAGAATACATCTTTTGAACCATATTTCTGGGCCAATGATCGTTATGCTTTCTCCAGCAGCTCTAACAATTTTAATTCCTGCCCCAGAGATGAGGATGGACTGAGGGAGGATTCCAAGGTACATTGCTGGGGAGCCCCCACGTTTCCTCTGAAGAAGGCTTGGCAATCAAGGCATCGACGGGAAGGATCGAATCTAGTGGGATGGGTTCTACCATGTGGCGCAACAAAGTAG 2628 42.2 MMDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMSKFSALVDSLNWETNSSNGISLRFVNGFQEGGPDNNGLLGLENFPGQREELYGGLRKPDPNTSLLANEESNAIDHNDRGCGIRCCWSRTPRFRESNLLSDKWSWKCFNNEITPYSESPRSLSQKFRPKAFNELVGQNVVARSLLGAISRGRITSFYLFHGPRGTGKTSASRIFAAALNCLSLEEHRPCGLCRECVLFFSGRSRDSKEIDTVRINQTGRMRSLIKHAIGRPVSSRFKVFIIDECHLLRGETWATVLNSLDDLPQHVVFIMITPSLDKLPRSAVSRSQRYHFPKIKDADIASKLGRICVEECLEFDQVALDFIAAKSNGSLRDAEMMLDQLSLLGKRITMSMTYELIGIVSDDELLDLLDLALSSDTSNTVRRARELMRSRIDPMQLISQLANLIMDILAGKCQEGTSEVRRNFFEGHTSEVDLQKLSHALKILSETEKQLRASKNQTTWLTVALLQLSSVESSFLDANDSRAFLRTEHPRGENVKRLVTCACDNNKPHICEVQEDCKGQLEFLWKQATEICQSSSLKNFLRKQGKLSSVIVSQGMAVAELEFQHPDYVSKAEKSWKLIASSLQSILGCNVEIRINLAPCTSVKGYAKVKKPSFSFFSCSRRMRLKSHSTSEHGSDQSDCSDFTSEKAMIRDKTIGTCSSDCGSQVSHVCYLRTEAARTLRNREGNVLGIGTITPHRPFQDEIPKGTGFEVGSSKEEQSSCGCQEPENQPNCLFNTFGLHKKLRSSEASQMTCLRYQAQNKLALSVPKNTSFEPYFWANDRYAFSSSSNNFNSCPRDEDGLREDSKVHCWGAPTFPLKKAWQSRHRREGSNLVGWVLPCGATK* 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11694436 11701341 + Vvi17g878 Vvi17g878 779575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g878 875 Gene3D - 328 390 - -
Vvi17g878 875 Pfam DNA polymerase III, delta subunit 170 327 - -
Vvi17g878 875 CDD AAA 168 318 - -
Vvi17g878 875 Pfam DNA polymerase III subunits gamma and tau domain III 386 505 IPR022754 GO:0003887
Vvi17g878 875 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 143 775 - -
Vvi17g878 875 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 154 500 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vvi17g878 875 Gene3D - 391 505 - -
Vvi17g878 875 CDD HLD_clamp_pol_III_gamma_tau 327 390 IPR045085 -
Vvi17g878 875 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 143 775 - -
Vvi17g878 875 SUPERFAMILY post-AAA+ oligomerization domain-like 397 499 IPR008921 GO:0003677|GO:0006260
Vvi17g878 875 SMART AAA_5 186 328 IPR003593 -
Vvi17g878 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 377 IPR027417 -
Vvi17g878 875 Gene3D - 147 325 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g878 - - - vvi:100253504 1519.98
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g878 . . . . Bpe12g00681 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0193 Cone19ag0187 . . . . Blo13g00158 Blo15g00239 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004154 1 1 4 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43