Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g880 ATGACCATACAGACCGCCGTCCTCATCGAAACCCTAACCGCCTTGGGTGCCGAGTACTGGTGGTGCACCGAGCGTGCCCTCGATTGGGGCCCCGGCGGTGGCCCTGATCTGATTGTCGACGACGGTGGCGATGCCACGCTGTTGATCCACGAAGGATATCGGAAGATGAAGGAGAGATTGGTTGGAGTTTCGGAAGAGACAACCACCGGTGTGAAGAGGCTGTACCAGATGCAGGCAAATGGAACTCTTTTGTTTGCTGCTATCAATGTCAACGATTCTGTTACCAAGAGCAAGTTTGACAACTTGTATGGATGCCGACACTCCCTCCCCGATGGTCTCATGAGAGCCACTGATGTCATGATTGCTGGCAAGGTTGCTGTGGTCTGTGGGTATGGAGATGTTGGGAAGGGCTGTGCTGCCGCGCTCAAGCAGGCTGTCCTAACCTTGGAAGATGTAGTCTCAAAGGCTGACATCTTTGTGACCACCACTGGGAACAAAGACATCATCATGGTTCACCACATGAAGCAGATGAAGAACAATGCAATTGTTTGTAACATTGGCCACTTTGACAATGAGATTGATATGCTTGGTCTGGAAACCTACCCTGGTGTTAAGCGCATCACAATCAAGCCCCAAACTGATCGATGGGTTGCAGCTCTTCACCTTGGAAAGCTTGGTGCTAAGCTCACCAAGCTTAGCCCCGAGCAAGCTGCTTACATTAGTGTCCCTGTGGAAGGTCCTTACAAGCCCACTCACTACAGGTACTAG 768 51.43 MTIQTAVLIETLTALGAEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGYRKMKERLVGVSEETTTGVKRLYQMQANGTLLFAAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAVLTLEDVVSKADIFVTTTGNKDIIMVHHMKQMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVAALHLGKLGAKLTKLSPEQAAYISVPVEGPYKPTHYRY* 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11735838 11738219 + Vvi17g880 Vvi17g880 779577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g880 255 Pfam S-adenosyl-L-homocysteine hydrolase 53 254 IPR000043 -
Vvi17g880 255 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 1 255 - -
Vvi17g880 255 Pfam S-adenosyl-L-homocysteine hydrolase, NAD binding domain 101 144 IPR015878 -
Vvi17g880 255 Pfam S-adenosyl-L-homocysteine hydrolase, NAD binding domain 146 217 IPR015878 -
Vvi17g880 255 SMART AdoHcyase_2 1 254 IPR000043 -
Vvi17g880 255 Gene3D - 17 53 IPR042172 -
Vvi17g880 255 Gene3D - 54 106 IPR042172 -
Vvi17g880 255 PANTHER ADENOSYLHOMOCYSTEINASE 18 52 IPR000043 -
Vvi17g880 255 PANTHER ADENOSYLHOMOCYSTEINASE 145 217 IPR000043 -
Vvi17g880 255 PANTHER ADENOSYLHOMOCYSTEINASE 53 145 IPR000043 -
Vvi17g880 255 PANTHER ADENOSYLHOMOCYSTEINASE 217 255 IPR000043 -
Vvi17g880 255 Gene3D - 147 225 - -
Vvi17g880 255 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 2. 123 140 IPR020082 -
Vvi17g880 255 Gene3D - 107 146 - -
Vvi17g880 255 SMART AdoHcyase_NAD_2 101 227 IPR015878 -
Vvi17g880 255 PANTHER ADENOSYLHOMOCYSTEINASE 217 255 - -
Vvi17g880 255 PANTHER ADENOSYLHOMOCYSTEINASE 18 52 - -
Vvi17g880 255 PANTHER ADENOSYLHOMOCYSTEINASE 145 217 - -
Vvi17g880 255 PANTHER ADENOSYLHOMOCYSTEINASE 53 145 - -
Vvi17g880 255 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 101 217 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g880 K01251 AHCY, ahcY; adenosylhomocysteinase [EC:3.13.2.1] - vvi:100265604 393.275
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g880 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001274 4 2 3 4 3 2 0 2 2 2 2 2 5 2 2 4 2 4 3 2 2 2 3 1 3 2 2 5 2 2 76