Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g882 ATGGCGTTCATGCACCAAACATTTTCTTCTCCTTCTTGTCCTCTCTTCTATCGTAAACCCCATTTCTCCAAAACCCTAATAAGATTCTCTGCAACTCCCTCTAGTCCTGTTCCCACTCCTTCCTCTCACTCTTCATCCCCCATTTTCCTCCCTTTTCTCCAAGAACAAGACCGAACACTCCAACACCAACGACAGCAGAAGGAAGAAGAAGACGAGGATCCAAATGACCCAATTCTCAGATTCTTCAAGTCTCGCACTTCAACCCAAGACCCCAGATTCGAATCCAAATTCTCCCTCCAAAAGAATCGCCGCCCCTCCTGGCGTCTCGCCTCCACCACTGACCCCGAATCTGACGCCGAATTCGATGTCGAGGAGGAAAAAGAGCAAGTGGTTTCGGACTCATGTACGTCACTCCAGGGCATTTCTGGTGAAATTCTTCATTTTGCAAGGAATTTGCCTGAGAATTCAACGTTAGGGGAGGTTTTGGGGCCTTACGTGGGCAGAGTAGGTGAAAGAGAGTGTGTGGAAGTTTTGGGTTTGATGTGTGAGGAGGATCTTGTAATGGGTTGTTTGTATTTCTTTGAGTGGATGGGGTTGCAGGAGCCGTCGCTCGTTACCGCTCGAGCCTGCTCGCTTTTGTTTCCGATGTTGGGGAGAGCAGGCATGGGTGACGACTTAATGGTTTTGCTTAGGAATCTACCGAAGACGAGGCAATTCAGGGATGTTCGTATTTATAATTCAGCAATTTCAGGCTTGTCGTCCTGTGGGAGGTATGATGATGCTTGGAAGGTGTATGACGAAATGGAAACAAATAATATCCGTCCAGATCATGTCACATGTTCTATTATGATTACAGTCATGAGGAAAGACGGGCATAGTGCCAAAGATGCTTGGGAGTTCTTTCAGAGAATGAACAGGAAAGGAGTTAAATGGAGTTTGGAAGTCTTGGGTGCTCTTATAAAATCGTTCTGTGATGAGGGGCTGAAGAATGAGGCCCTTATAATCCAATCAGAGATGGAGAAGAAAGGGATCTCTTCAAATGCTATTGTGTATAACACTCTGATGGATGCATACAGTAAATCCAACCGGGTTGAAGAAGCTGAAGGTCTCTTTGGTGAGATGAAGGCAAAGGGTGTTATGCCTACATCTGCCACCTATAACATTCTAATGGATGCATACAGCCGAAGAATGCAGCCCGAAATCATTGAGAATTTACTGTTGGAGATGCAGGATATGGGCTTGGAGCCAAATGTCAAATCATATACATGCCTAATTAGTGCATATGGTAGACAGAAGAAGATGAGTGACATGGCTGCAGATGCATTCTTGAGGATGAAGAAAGTAGGTATCAAACCCACTTCACATTCTTATACAGCTCTTATCCATGCATATTCAGTCGGTGGCTGGCATGAGAAAGCTTATACAGCATTTGAGAACATGAAAAGGGAAGGAATAAAACCTTCCATAGAAACTTATACTGCTCTACTAGATGCATTTAGGCGTGCTGGTGATACCCAAACACTGATGAAAATTTGGAAATTGATGCTCAGTGACAAAATTGAAGGGACACGGGTGACCTTCAACATTCTTCTTGATGGATTTGCTAAACAAGGACACTACATGGAAGCAAGAGATGTGATTTTTGAATTTGGGAAGATTGGTTTCCAACCAACAGTGATGACATATAATATGCTGATGAATGCTTATGCACGGGGAGGGCAACACTCAAGGTTGCCACAGCTATTGAAAGAGATGACGTCCCTCAATCTAAAACCTGATTCTATTACTTATTCAACAATGATCTATGCTTATGTTCGTGTTCGTGATTTCAAGAGGGCATTCTTTTATCATAAGCAGATGGTGAAAAGTGGACAAGTACCAGATCCCCAATCTTATCAGAAGCTGAGGTCAATTTTAGATGTAAAAGCTGCAACAAAGAATAGGAAGGACAGGAGTGCTATACTCGGGATTGTTAATAGCAACATGGGTTTGTTGAAACCTAAGAAAGGAAAGAAAGACGAGTTCTGGAAGAACAAGAAGGGGCAAAGGAGAATTCAAAAAAGGAAAGCATACACCCACTTCAGCTTTAATGATGAAAACCTTCACATGAACCTTATCATCATTTCACAAACAATAACATTTGCGGCGTTGAGTCTCTTTGCAATACACCAGTTACACCACAAGATTCATGTCAAGAAATGCTTCATCACACGAACTAACGGAGAAGGCAACTGTATGTGA 2241 43.11 MAFMHQTFSSPSCPLFYRKPHFSKTLIRFSATPSSPVPTPSSHSSSPIFLPFLQEQDRTLQHQRQQKEEEDEDPNDPILRFFKSRTSTQDPRFESKFSLQKNRRPSWRLASTTDPESDAEFDVEEEKEQVVSDSCTSLQGISGEILHFARNLPENSTLGEVLGPYVGRVGERECVEVLGLMCEEDLVMGCLYFFEWMGLQEPSLVTARACSLLFPMLGRAGMGDDLMVLLRNLPKTRQFRDVRIYNSAISGLSSCGRYDDAWKVYDEMETNNIRPDHVTCSIMITVMRKDGHSAKDAWEFFQRMNRKGVKWSLEVLGALIKSFCDEGLKNEALIIQSEMEKKGISSNAIVYNTLMDAYSKSNRVEEAEGLFGEMKAKGVMPTSATYNILMDAYSRRMQPEIIENLLLEMQDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVGGWHEKAYTAFENMKREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTFNILLDGFAKQGHYMEARDVIFEFGKIGFQPTVMTYNMLMNAYARGGQHSRLPQLLKEMTSLNLKPDSITYSTMIYAYVRVRDFKRAFFYHKQMVKSGQVPDPQSYQKLRSILDVKAATKNRKDRSAILGIVNSNMGLLKPKKGKKDEFWKNKKGQRRIQKRKAYTHFSFNDENLHMNLIIISQTITFAALSLFAIHQLHHKIHVKKCFITRTNGEGNCM* 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11776047 11781289 + Vvi17g882 Vvi17g882 779579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g882 746 Coils Coil 53 73 - -
Vvi17g882 746 PANTHER - 3 686 - -
Vvi17g882 746 MobiDBLite consensus disorder prediction 55 78 - -
Vvi17g882 746 Gene3D Tetratricopeptide repeat domain 143 295 IPR011990 GO:0005515
Vvi17g882 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Vvi17g882 746 Pfam Pentatricopeptide repeat domain 477 532 IPR002885 -
Vvi17g882 746 Pfam Pentatricopeptide repeat domain 405 464 IPR002885 -
Vvi17g882 746 Gene3D Tetratricopeptide repeat domain 517 709 IPR011990 GO:0005515
Vvi17g882 746 PANTHER OS03G0856100 PROTEIN 3 686 - -
Vvi17g882 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 452 IPR002885 -
Vvi17g882 746 Gene3D Tetratricopeptide repeat domain 412 516 IPR011990 GO:0005515
Vvi17g882 746 Gene3D Tetratricopeptide repeat domain 333 411 IPR011990 GO:0005515
Vvi17g882 746 Pfam PPR repeat family 557 605 IPR002885 -
Vvi17g882 746 Pfam PPR repeat family 241 286 IPR002885 -
Vvi17g882 746 Pfam PPR repeat family 347 394 IPR002885 -
Vvi17g882 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Vvi17g882 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 558 592 IPR002885 -
Vvi17g882 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 557 IPR002885 -
Vvi17g882 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 311 IPR002885 -
Vvi17g882 746 Pfam PPR repeat 318 344 IPR002885 -
Vvi17g882 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 593 627 IPR002885 -
Vvi17g882 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Vvi17g882 746 TIGRFAM PPR: pentatricopeptide repeat domain 561 594 IPR002885 -
Vvi17g882 746 TIGRFAM PPR: pentatricopeptide repeat domain 385 418 IPR002885 -
Vvi17g882 746 TIGRFAM PPR: pentatricopeptide repeat domain 491 521 IPR002885 -
Vvi17g882 746 TIGRFAM PPR: pentatricopeptide repeat domain 525 549 IPR002885 -
Vvi17g882 746 TIGRFAM PPR: pentatricopeptide repeat domain 595 628 IPR002885 -
Vvi17g882 746 TIGRFAM PPR: pentatricopeptide repeat domain 455 488 IPR002885 -
Vvi17g882 746 TIGRFAM PPR: pentatricopeptide repeat domain 244 276 IPR002885 -
Vvi17g882 746 TIGRFAM PPR: pentatricopeptide repeat domain 420 453 IPR002885 -
Vvi17g882 746 TIGRFAM PPR: pentatricopeptide repeat domain 349 382 IPR002885 -
Vvi17g882 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Vvi17g882 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Vvi17g882 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Vvi17g882 746 MobiDBLite consensus disorder prediction 60 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g882 - - - vvi:100241526 1347.8
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g882 . Blo16g00245 . . . . Bma06g00240 . Cmo13g00801 Cmo18g00086 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00459 Csa01g00915 Chy12g01209 Cme12g01631 . . Bda11g01628 . . . . . . . . Cma13g00772 Cma18g00109 Car13g00619 . . . . . . . . . . Cla03g00315 Cam03g0334 Cec03g0325 Cco03g0338 Clacu03g0335 Cmu03g0941 Cre03g0635 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003460 2 1 2 2 1 1 2 1 1 1 1 1 2 2 2 2 1 2 1 1 2 2 2 2 2 1 2 2 2 2 48