Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g884 ATGTCGGAACCGGCGGCGACCAAACCGCAGCCACTCCCTATAAAATCTGAAGTCGGTGTCACAGAGAACTCGGCCGACGAGAGCTCGAAGCGGCCGCAGATTTCCAAAGTGGTGGTTTTAGCCGACCTCAACGTCGACCCTCCTGAGACTGACGACGACGATTCCCTCCACGTCTCCGCTCCCGATCTCACCAGGTTGACCAATGATGATAGCAGTCAAGATAAAAGTACCTTAGTGAGCAAAGACACAGATATGGTGGATGGAGAAGGTAAACGGTTAAACAAATTGGGGAAGCCCCGTTCAAGAGTTACTAAGGTGGAGTACCCTCTTGATTATGGGGCTGATGCAGATGCTGACCAGCATGGTCAAGGGGCTCCCACATCCCGTGAGGAAAAAGTCAGCAGTCTTAAGACCGGTTTGGTACATGTAGCAAGGAAGATGCCCAAAAATGCTCATGCTCATTTTATACTTGGATTAATGTATCAGAGGTTGGGTCAGCCACAAAAGGCAGTTTCTGCATATGAGAAGGCAGCAGAGATCTTGCTCCGCTGTGAAGAAGAGATTGACAGGCCAGAGTTGCTTTCACTAGTTCAGATTCATCATGCACAGTGCCTTCTTCTAGGAAGTTCAGGTGATCATAGCGCAGACAAAGAACTTGAACCTGAAGAATTGGAGGAAATTCTTTTGAAAATGAAGGATTCAATGCAATCAGATATTAGACAGGCGGCTGTGTGGAATACTCTCGGCTTAATACTTCTTAGAACTGGCCGTCTGCAGAATGCTATTTCGGTTTTGTCATCTTTGTTGACCATTGCTCCAGACAACTTGGATTGCCTTGGAAACCTTGGAATTGCTTACCTTAGAAGTGGGAATTTGGAGCTTGCAGAAAAATGTTTTCAGAATTTGATTTTGAAAGATCAAAATCATCCTGCTGCTCTAATCAACTATGCTGCAGTTCTAATGTGTAAATATGGCTCGATCATTGCAGGTGCTGGGGCAAATTCTGGTGAAGGAGCTTCTGAGGATCAGCTTATAGCTGCCAATGTTGCAAAAGAGTGTTTGTTAGCAGCAGTAAAAGTGGAACCCAAAGCAGCACATGTTTGGGCAAATCTCGCAAATGCTTATTATTTGATGGGTGATTGTAGAAGTTCTAGCAAGTGCTTCGAGAAGGCAGCAAAACTAGAGCCCAATTGTATGTCTACACGATATGCTGTTGCAGTCCACCAAATCAAGGATGCAGAAAGATATCAAGATCCTAGTGAACAGCTTTCCTGGGCTGGAAATGAAATGGCTTCTATACTAAGAGAAGGAGATTCTGCTCTCATTGAGCATCCCATAGCATGGGCAGGGCTTGCCATGGTTCATAAGATCCAGAATGAAATTGCAGCAGCATTTGAAACTGAGCATAAAGGGTTGATGGAGATGGAAGAGCGTGCTGTACACATTTTAAAGCAGGCAATAGCAGAGGACCCAGATGATGCTGTACAGTGGCACCAGCTTGGTCTTCATAATCTTTGTGTTCAACAATTCAAGACATCACAAAAGTACCTCAAGGCTGCAGTTGCCCGTTCTAAGGAATGCAGCTATATGTGGTCCAATCTTGGTATCTCACTGCAGTTATCAGAGGAGCCAGCGCAGGCAGAACAAGTATACAAGCGAGCCTTGTCCTTGGTGACCCCTCAGCAGGCATATACAATATTTTCCAACCTTGGGAATCTATATAGGCAACAAAAGAAGTACCAATCTGCAAAAGCAATGTTTACAAAGTCACTCGAACTCCAACCCGGTTATGCTCCTGCATATAACAATCTAGGTCTGGTATTCATTGCTGAGGGTCGGTGGAAGGAAGCCGAATTCTGCTTCAACAAGGCCCTCCAGGCAGACCCACTGCTGGATGCGGCCAAGTCCAACATGATCAAAGCAGCGGCCATGTCCAGAGTCTGTCAGCATCTCTCCTCATGTTCGCTTCAAGATTGA 1977 45.88 MSEPAATKPQPLPIKSEVGVTENSADESSKRPQISKVVVLADLNVDPPETDDDDSLHVSAPDLTRLTNDDSSQDKSTLVSKDTDMVDGEGKRLNKLGKPRSRVTKVEYPLDYGADADADQHGQGAPTSREEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVSAYEKAAEILLRCEEEIDRPELLSLVQIHHAQCLLLGSSGDHSADKELEPEELEEILLKMKDSMQSDIRQAAVWNTLGLILLRTGRLQNAISVLSSLLTIAPDNLDCLGNLGIAYLRSGNLELAEKCFQNLILKDQNHPAALINYAAVLMCKYGSIIAGAGANSGEGASEDQLIAANVAKECLLAAVKVEPKAAHVWANLANAYYLMGDCRSSSKCFEKAAKLEPNCMSTRYAVAVHQIKDAERYQDPSEQLSWAGNEMASILREGDSALIEHPIAWAGLAMVHKIQNEIAAAFETEHKGLMEMEERAVHILKQAIAEDPDDAVQWHQLGLHNLCVQQFKTSQKYLKAAVARSKECSYMWSNLGISLQLSEEPAQAEQVYKRALSLVTPQQAYTIFSNLGNLYRQQKKYQSAKAMFTKSLELQPGYAPAYNNLGLVFIAEGRWKEAEFCFNKALQADPLLDAAKSNMIKAAAMSRVCQHLSSCSLQD* 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11826628 11853120 + Vvi17g884 Vvi17g884 779581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g884 658 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 22 655 - -
Vvi17g884 658 Gene3D Tetratricopeptide repeat domain 558 655 IPR011990 GO:0005515
Vvi17g884 658 ProSiteProfiles TPR repeat profile. 365 398 IPR019734 GO:0005515
Vvi17g884 658 Gene3D Tetratricopeptide repeat domain 442 556 IPR011990 GO:0005515
Vvi17g884 658 MobiDBLite consensus disorder prediction 1 80 - -
Vvi17g884 658 Gene3D Tetratricopeptide repeat domain 333 439 IPR011990 GO:0005515
Vvi17g884 658 Pfam Tetratricopeptide repeat 151 180 IPR019734 GO:0005515
Vvi17g884 658 Pfam Tetratricopeptide repeat 365 398 IPR019734 GO:0005515
Vvi17g884 658 Pfam Tetratricopeptide repeat 565 627 - -
Vvi17g884 658 ProSiteProfiles TPR repeat profile. 564 597 IPR019734 GO:0005515
Vvi17g884 658 Gene3D Tetratricopeptide repeat domain 138 198 IPR011990 GO:0005515
Vvi17g884 658 SUPERFAMILY TPR-like 148 401 IPR011990 GO:0005515
Vvi17g884 658 Gene3D Tetratricopeptide repeat domain 199 324 IPR011990 GO:0005515
Vvi17g884 658 ProSiteProfiles TPR repeat profile. 598 631 IPR019734 GO:0005515
Vvi17g884 658 ProSiteProfiles TPR repeat region circular profile. 598 629 - -
Vvi17g884 658 SMART tpr_5 276 309 IPR019734 GO:0005515
Vvi17g884 658 SMART tpr_5 365 398 IPR019734 GO:0005515
Vvi17g884 658 SMART tpr_5 242 275 IPR019734 GO:0005515
Vvi17g884 658 SMART tpr_5 564 597 IPR019734 GO:0005515
Vvi17g884 658 SMART tpr_5 598 631 IPR019734 GO:0005515
Vvi17g884 658 SMART tpr_5 528 561 IPR019734 GO:0005515
Vvi17g884 658 SMART tpr_5 494 527 IPR019734 GO:0005515
Vvi17g884 658 SMART tpr_5 151 184 IPR019734 GO:0005515
Vvi17g884 658 MobiDBLite consensus disorder prediction 114 133 - -
Vvi17g884 658 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 22 655 - -
Vvi17g884 658 SUPERFAMILY TPR-like 477 629 IPR011990 GO:0005515
Vvi17g884 658 ProSiteProfiles TPR repeat profile. 151 184 IPR019734 GO:0005515
Vvi17g884 658 Pfam Tetratricopeptide repeat 252 311 - -
Vvi17g884 658 ProSiteProfiles TPR repeat profile. 242 275 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g884 - - - vvi:100256924 1256.89
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g884 Blo04g00710 . . . . . . . Cmo13g00806 . . . . . . Cpe20g00336 . . . . . . . . . . . . . . . . . Cone13ag0196 . Lsi02g00462 Csa01g00919 Chy12g01208 Cme12g01629 . . . Bda14g00783 . Bpe15g00663 Bma03g00758 . . . . Cma13g00775 . Car13g00621 . . . Bhi08g01689 . . Lac10g0534 . . . Cla03g00319 . . . Clacu03g0337 Cmu03g0943 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009614 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32