Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g886 ATGAAGCTGATGCAACTGTCACGTGAGGAGGGCATGAGAGGTCAGGCATTTTTGGAGGCTCTCTGGAAGTCTCTAGAGAGGATGATCCCTCGTGATGAACACGTGAACATGGAAGCATGCACACCACGTTTGACCATAAATCTCAGATTCTCCCTCAACTTCTTCTGCGTTTCCGGTCCACGGTACCGGCCTCCATGTTTGCCGGCGTTGCCCACCTCCGGTGTGTCTTCGCCACCACCGGAGCAGCCCTCCAGACTGCCTCCCGACTTGCTTCAGATTGCGTCCGTCTCTGCTATTCTCTTCCTCGGGTTCGGTGTCCGCGCCTGCTCTGCCACTTCAGGACGTTTTCCGGTGGTTGTAGCCGCCGAGTGTCGAACTGTTCAGGAGCAGAGGATTCAAGATGAGATTTTGGTGTTGGAGTTCTCCGAGGTTCTTCCACTCGAGGTGGGAGTTTTGGCTATTGGGTTTGAAGGAACTCTAAATGACAAAATGAAGGGGTTCTACAGAAGCACTTTTGAGCATAATGGGGAAAAGAGGAATATGGCAGTTACACAGTTCGAACCAGCTGATGCCAGGCGATGCTTTCCATGCTGGGATGAGCCTGCTTGCAAGGCTACATTCAAGATCACATTAGATATGCCATCTGACCTCATAGCTCTTTCAAATATGCCTGTCATAGAAGAAAAAACTGAATGGGCATCTCAAGACAGTTTCCTATCAAGAATCGCCAATTATGTCTACATATTTGGTGGCAGTTACACTTGGCTTATACAAAGAATACTTTGCTTGTCCATACTCACTACCCAGATTGGACATGATAGCAATCCCCAAGACGCTGCAAGGGCATTGGATGTGTTGAATTTCACTCCTCTCAATGGAAAGCCACTTAGGATTATGTATTCCCATCGTGACCCTAGTATCCGCAAAAGTGGAACTGAAAATATATTTATTAAGAATTTGGATAAAGGGATTGACCACAAAGCATTGCATGACACTTTTTCCGCATTTGGTAACATCCTCTCATGTAAGGAAGCCACTGATGCATCTGGAATGCAAGGCTGCCATATAAATTGA 1074 47.21 MKLMQLSREEGMRGQAFLEALWKSLERMIPRDEHVNMEACTPRLTINLRFSLNFFCVSGPRYRPPCLPALPTSGVSSPPPEQPSRLPPDLLQIASVSAILFLGFGVRACSATSGRFPVVVAAECRTVQEQRIQDEILVLEFSEVLPLEVGVLAIGFEGTLNDKMKGFYRSTFEHNGEKRNMAVTQFEPADARRCFPCWDEPACKATFKITLDMPSDLIALSNMPVIEEKTEWASQDSFLSRIANYVYIFGGSYTWLIQRILCLSILTTQIGHDSNPQDAARALDVLNFTPLNGKPLRIMYSHRDPSIRKSGTENIFIKNLDKGIDHKALHDTFSAFGNILSCKEATDASGMQGCHIN* 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11874603 11876146 - Vvi17g886 Vvi17g886 779583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g886 357 Gene3D - 302 354 IPR012677 -
Vvi17g886 357 PANTHER AMINOPEPTIDASE M1-A 132 231 - -
Vvi17g886 357 PANTHER PROTEASE M1 ZINC METALLOPROTEASE 132 231 - -
Vvi17g886 357 Pfam Peptidase M1 N-terminal domain 130 231 IPR045357 -
Vvi17g886 357 Gene3D tricorn interacting facor f3 domain 118 248 IPR042097 -
Vvi17g886 357 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 127 231 IPR042097 -
Vvi17g886 357 SUPERFAMILY RNA-binding domain, RBD 275 347 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g886 K08776 NPEPPS; puromycin-sensitive aminopeptidase [EC:3.4.11.14] - vvi:100264544 197.593
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g886 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031719 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2