Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g892 ATGAGGGGGATTTCTAGGGCAAAGGGGTCATTATTGAGGTTCATGAAGGAGGAGATACCAGGAGTCACTTCACCTATGGTGTATGTTGCAATGATGTTCAGCTGGTTTGCTTGGCATGTGGAGGATCATGATTTGCACAGTTTGAACTATTTGCATATGGGAGCAGGAAAGACATGGTATGGTGTGCCTAGGGAAGCTGCAGTTGCTTTTGAGGAAGTGGTTAGGGTTCATGGTTATGGAGGAGAGATCAATCCTCTGGTCACTTTTGCAGTACTTGGTGAGAAGACCACTGTCATGTCACCTGAAGTATTTGTTAGTGCAGGGATTCCATGCTGCAGGTTGGTACAAAACCCTGGAGAGTTCGTTGTCACTTTCCCAAGAGCCTACCATTCAGGCTTCAGCCATGGGTTTAATTGTGGGGAGGCAGCAAATATTGCCACTCCTGAATGGTTGAGGGTTGCAAAAGATGCTGCAATTCGTAGAGCTTCAATCAATTATCCTCCCATGGTGTCTCATTTCCAGTTGCTTTATGATCTTGCATTAGCATTATGTTCAAGGATCCCCATGAGCATAAGTGTTGAACCACGGAGTTCTCGACTCAAGGATAAGAAGAGGGGTGAAGGAGAAACAGTGGTCAAGGAGCTGTTTGTGCAGAATATAATGCAAAACAATGACCTGCTTCATATTCTTGGAAAGGGGTCCTCAATTGTACTTCTTCCCAAAAGATCTTCTGATATCTCTGTTTGCCCAAATTTACGTGTTGGATCTTCATCAAGGGTAAAACCTAGGTTATCCCTTGGTTTATGCAATCTGGAGGAAGCAATGAAAACCTCAAAAAGTATACTCCATTTATCACATGGAAATGATAATGGCAGTGCTTTGACTTCTCAGACACAAAACATGGAGACTAAAATTGAAAGTATCTCTCATGGGGATGGGTTGTCAGATCAAGCATTATTTTCATGTGTCACATGTGGGATTTTGAGTTTTGCTTGCGTTGCTTTAATTCAACCAAGAGAAGCAGCAGCAAGATACCTAATGTCAGCTGATTGTAGCTTCTTTAACGATTGGATTGTTGGTTCTGGTCCTTCTGGAGTGGCAAATGAGGATTTCACTGGTGTCAGTGGGGATGTGCACAATTCTGAGCTGAATTCCTGTTCAGGATGGATGAGAAAGCGGGTTCCAAATGCTTTATTTGATGTCCCTATTCAGTCTGCTAATTATCAGATTCAAACGGTAGATCAAAATAATGAAGTGGTTTCAAATACTGGAACACAGAAAAACACTTCTGCTCTTGGTCTATTAGCCTTAACTTATGCCAATTCGTCTGATTCCGAGGAAGATCAGCTTGAGCCAGATATTCCTTTGGAAGCAGATAATCTTGCTTCTACTGAATCAAATAGTTCAGAAGGTATATTTAGAGATCCATTAGCCATATCATGGGCCACTTCCAAATATTCCCCAGTTGGCCATGATGCTGAAAGAGCAAAGTTTAGCAATGCCATTGTCCCAGTAGAGAATACAAACATGTCATTTGCTCCAAGATCTGATGAAGATTATTCTAGAATTCATGTCTTCTGTCTTGAGCATGCTGTAGAAGTAGAGCAGCAACTTCGTCCAATAGGTGGAGTGAATATGTTGCTACTTTGCCATCCAGATTATCCCAAGGTGGAGGCTGAAGCAAAATTAGTGGCAGAAGATCTTGGAATAGATTATCTCTGGAATGATTTTGTGTACAGAGATGCAACTAAAGAGGATGGTGAGATGATTCAATCAGCTTTGGATAGTGAGGAATGCATACCTGGAAATGGCGACTGGGCTGTAAAGCTGGGTGTCAATCTCTATTACAGTGCTAATCTGAGCCGCTCTCCTCTCTATATTAAGCAGATGCCATACAACTCTGTTATATACAATGTATTTGGGCGCAGTTCGGCTAACTCACCCACAGCACCTGATGTTTATGGGAGAGGGCCTGGCAAGCAGAAAAAGATTGTAGTGGCAGGGAAATGGTGTGGGAAAGTTTGGATGTCAAATCAAGTTCATCCCCTTCTAGCACAAAAGGATCCTGAAGAACAAGAGGAAGATAGGAACTTCCATGTTTGGGTAAAAAAGCCTGATGAGAAGCCTGAGAGAAAATCAGAAAGTAGCCGGAAAGCTGAAACAAGCTCTGCACCCAGAAAGTCTGGTAGGAAGAGGAAAATGATGGTAGAGAATGGATCAACTAAGAAAGCCAATCGTCCAGAGAGAGAAGATCCGACTCCTCGGCGTCGGAACAGTTGTGAGCAAAGCGCCAGAGAGTTTGATTCTTATGTTGAAGATGAGCTGGAAGGTGGACCAAGCACACGCCTCCGGAGGAGAAACCCAAAACCTCCCAAAGAGTTGGAAGCCAAACCAGTAGTAAAGAAGCAAACAGCTAGGAAAAAGGCAAAGAAAGCTCCAGCAGCCAAGGCACCAGGCAACCACAACAATGCAAAGATACAAGATGAGGAAGAAGAGTACCAGTGTGACATGGAAGGATGCACCATGAGTTTCAGCTCGAAGCCAGAGCTGGCATTGCATAAAAAGAACATCTGTCCAGTGAAGGGGTGTGGAAAGAAGTTCTTCTCGCACAAATACTTAGTGCAGCATCGGCGAGTCCACATCGATGATCGTCCCCTCAAGTGTCCCTGGAAGGGCTGCAAGATGACATTCAAGTGGGCGTGGGCTAGGACAGAGCACATCAGGGTTCACACAGGTGCCCGGCCTTACATTTGCACCGAGGCAGGCTGTGGGCAAACGTTCAGATTTGTATCCGACTTCAGTCGTCACAAGCGGAAGACTGGTCATTCTGCAAAGAAGGCCAGAGGATAA 2850 44.32 MRGISRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPREAAVAFEEVVRVHGYGGEINPLVTFAVLGEKTTVMSPEVFVSAGIPCCRLVQNPGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPMSISVEPRSSRLKDKKRGEGETVVKELFVQNIMQNNDLLHILGKGSSIVLLPKRSSDISVCPNLRVGSSSRVKPRLSLGLCNLEEAMKTSKSILHLSHGNDNGSALTSQTQNMETKIESISHGDGLSDQALFSCVTCGILSFACVALIQPREAAARYLMSADCSFFNDWIVGSGPSGVANEDFTGVSGDVHNSELNSCSGWMRKRVPNALFDVPIQSANYQIQTVDQNNEVVSNTGTQKNTSALGLLALTYANSSDSEEDQLEPDIPLEADNLASTESNSSEGIFRDPLAISWATSKYSPVGHDAERAKFSNAIVPVENTNMSFAPRSDEDYSRIHVFCLEHAVEVEQQLRPIGGVNMLLLCHPDYPKVEAEAKLVAEDLGIDYLWNDFVYRDATKEDGEMIQSALDSEECIPGNGDWAVKLGVNLYYSANLSRSPLYIKQMPYNSVIYNVFGRSSANSPTAPDVYGRGPGKQKKIVVAGKWCGKVWMSNQVHPLLAQKDPEEQEEDRNFHVWVKKPDEKPERKSESSRKAETSSAPRKSGRKRKMMVENGSTKKANRPEREDPTPRRRNSCEQSAREFDSYVEDELEGGPSTRLRRRNPKPPKELEAKPVVKKQTARKKAKKAPAAKAPGNHNNAKIQDEEEEYQCDMEGCTMSFSSKPELALHKKNICPVKGCGKKFFSHKYLVQHRRVHIDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYICTEAGCGQTFRFVSDFSRHKRKTGHSAKKARG* 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11978866 11993275 + Vvi17g892 Vvi17g892 779589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g892 949 Pfam JmjC domain, hydroxylase 26 144 IPR003347 -
Vvi17g892 949 MobiDBLite consensus disorder prediction 686 802 - -
Vvi17g892 949 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 1 939 - -
Vvi17g892 949 ProSiteProfiles JmjC domain profile. 1 162 IPR003347 -
Vvi17g892 949 ProSiteProfiles Zinc finger C2H2 type domain profile. 916 947 IPR013087 -
Vvi17g892 949 Gene3D Classic Zinc Finger 913 942 - -
Vvi17g892 949 SUPERFAMILY beta-beta-alpha zinc fingers 872 914 IPR036236 -
Vvi17g892 949 Gene3D Classic Zinc Finger 858 882 - -
Vvi17g892 949 Gene3D Classic Zinc Finger 883 912 - -
Vvi17g892 949 MobiDBLite consensus disorder prediction 685 824 - -
Vvi17g892 949 ProSitePatterns Zinc finger C2H2 type domain signature. 858 880 IPR013087 -
Vvi17g892 949 Gene3D Cupin 1 182 - -
Vvi17g892 949 SUPERFAMILY beta-beta-alpha zinc fingers 904 938 IPR036236 -
Vvi17g892 949 SMART cupin_9 1 162 IPR003347 -
Vvi17g892 949 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 939 - -
Vvi17g892 949 SMART c2h2final6 886 910 IPR013087 -
Vvi17g892 949 SMART c2h2final6 856 880 IPR013087 -
Vvi17g892 949 SMART c2h2final6 916 942 IPR013087 -
Vvi17g892 949 SMART c2h2final6 833 855 IPR013087 -
Vvi17g892 949 SUPERFAMILY Clavaminate synthase-like 8 176 - -
Vvi17g892 949 ProSitePatterns Zinc finger C2H2 type domain signature. 888 910 IPR013087 -
Vvi17g892 949 ProSitePatterns Zinc finger C2H2 type domain signature. 918 942 IPR013087 -
Vvi17g892 949 ProSiteProfiles Zinc finger C2H2 type domain profile. 886 915 IPR013087 -
Vvi17g892 949 ProSiteProfiles Zinc finger C2H2 type domain profile. 856 885 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g892 - - - csin:114314106 1161.75
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14239 PF02373 JmjC 1.10E-37 CL0029 Vvi TF