Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g893 ATGGACGGCTCTGAAAACACCGTTTCAATTCCCAATGAAGATGAGTTAGGGTTAGGGCTCCGGCCTTCGTCTCCTGCCCAGCCTGATGTTGAGAAGCTCAACCAGGAATTCCTGTCTCTAGTGTTGGAGCAACACGAGCCTGTTGTTGAATCTCTCGCTTTGGAGCAACATGAGCCTGTTGTTGAATCTCTCGCTTTGGAGCAACATGAGCCTGTTGTTGAATCTCTCGCTTTGGAGGAGAGGGAGGAGGAGAAGGAGGAGGATGAGGAGAGTGATTCCAACGGTGAGGTGAAAGCAAGTGATGATGAGGAGGAGCAGTGCGAGAATCTTGAGGACGAATCGGCGGCCAAGGATGACAAGAGTGCCAGGTTTCAGTATCCGGTGAGGCCGGATGCGGTGGACTGTTCCTTTTATCTTCGGACTGGGACGTGTAAGTTTGGATCCAATTGCAAGTTCAATCACCCGATTAGAAGGAAGAACCAGGTTGCTAAGGAGAAGGTGAAGGAAAAGGAAAAGGAAGAATTTCCAGAAAGGCCAGGGCAAACAGAATGCAAGTATTACCTGAGGACAGGGGGATGTAAGTTTGGAAAAGCTTGTAGATATAATCACACGAAGGCTAAACCTTCTGCAGTTCCAGTTCTAGAGCTCAACTTTCTTGGCCTGCCAATCCGAATGGGAGAGAAAGAGTGTCCCTACTACATGCGGACTGGCTCATGCAAGTATGGAGCAAACTGCAGGTTTAATCATCCTGATCCTACAGCTGCAGGGGGATATGAATCTCCTTCAGGATATGGAAATGGGGGATCTGTTCCATTACAAGGTGCATCACAATCAAATATGGCATCTTGGTCTTCACCAAGAGCATTGAATGAGCCTGCTCCATTTGTGCCTATTATGTTTTCACCAACTCAAGGTGTTCCTCCCCCAAATCCTGAATGGAATGGATATCAGGCTCCTCTGTATCCACCACCACCACCAGAAAGGAGTATGCATCCCCCTCCAGCATTTGTTATAAACAATACAGCAACGGATGCCAATGTATATGGTCATCATCAACAGCAACAGCAATCGCTTATTGAAGACTTTCCAGAACGGCCTGGTCAACCTGAATGCTCTTACTTCTTAAAGACTGGGGACTGCAAATTTAGGGCTGCATGCAAATATCACCATCCAAAGAATCGAATTCCAAAGTCACCTCCATGCACCCTCAGCGACAAGGGTCTGCCATTAAGACCAGATCAGAATATCTGCACCCACTACAACCGCTATGGCATTTGCAAGTTCGGACCTGCCTGTAAATTTGACCATCCAGTAAATTATGGCAACTCGGCCTCGGCCCCTTCAGCTGAGTCTGGCCAAGACCAGCCCCCTCCTTTTGGGGGCTCTGTCACTGCTGATGGGGTCAGACCTGGCAGTGGGAACGGAAACGAGATTCTAATCCAGCAGCCTGTCTAA 1455 48.52 MDGSENTVSIPNEDELGLGLRPSSPAQPDVEKLNQEFLSLVLEQHEPVVESLALEQHEPVVESLALEQHEPVVESLALEEREEEKEEDEESDSNGEVKASDDEEEQCENLEDESAAKDDKSARFQYPVRPDAVDCSFYLRTGTCKFGSNCKFNHPIRRKNQVAKEKVKEKEKEEFPERPGQTECKYYLRTGGCKFGKACRYNHTKAKPSAVPVLELNFLGLPIRMGEKECPYYMRTGSCKYGANCRFNHPDPTAAGGYESPSGYGNGGSVPLQGASQSNMASWSSPRALNEPAPFVPIMFSPTQGVPPPNPEWNGYQAPLYPPPPPERSMHPPPAFVINNTATDANVYGHHQQQQQSLIEDFPERPGQPECSYFLKTGDCKFRAACKYHHPKNRIPKSPPCTLSDKGLPLRPDQNICTHYNRYGICKFGPACKFDHPVNYGNSASAPSAESGQDQPPPFGGSVTADGVRPGSGNGNEILIQQPV* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 11993838 12000969 + Vvi17g893 Vvi17g893 779590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g893 484 MobiDBLite consensus disorder prediction 265 286 - -
Vvi17g893 484 ProSiteProfiles Zinc finger C3H1-type profile. 224 252 IPR000571 GO:0046872
Vvi17g893 484 SUPERFAMILY CCCH zinc finger 223 251 IPR036855 GO:0046872
Vvi17g893 484 MobiDBLite consensus disorder prediction 444 484 - -
Vvi17g893 484 SUPERFAMILY CCCH zinc finger 409 437 IPR036855 GO:0046872
Vvi17g893 484 ProSiteProfiles Zinc finger C3H1-type profile. 365 393 IPR000571 GO:0046872
Vvi17g893 484 SUPERFAMILY CCCH zinc finger 130 157 IPR036855 GO:0046872
Vvi17g893 484 Gene3D - 331 402 - -
Vvi17g893 484 Gene3D - 411 458 - -
Vvi17g893 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 180 203 IPR000571 GO:0046872
Vvi17g893 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 155 IPR000571 GO:0046872
Vvi17g893 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 414 437 IPR000571 GO:0046872
Vvi17g893 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 226 250 IPR000571 GO:0046872
Vvi17g893 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 367 392 IPR000571 GO:0046872
Vvi17g893 484 Gene3D - 168 255 - -
Vvi17g893 484 MobiDBLite consensus disorder prediction 63 123 - -
Vvi17g893 484 SMART c3hfinal6 226 251 IPR000571 GO:0046872
Vvi17g893 484 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Vvi17g893 484 SMART c3hfinal6 365 392 IPR000571 GO:0046872
Vvi17g893 484 SMART c3hfinal6 178 205 IPR000571 GO:0046872
Vvi17g893 484 SMART c3hfinal6 411 438 IPR000571 GO:0046872
Vvi17g893 484 MobiDBLite consensus disorder prediction 80 112 - -
Vvi17g893 484 PANTHER PROTEIN PHOSPHATASE RELATED 60 456 - -
Vvi17g893 484 MobiDBLite consensus disorder prediction 266 286 - -
Vvi17g893 484 ProSiteProfiles Zinc finger C3H1-type profile. 178 206 IPR000571 GO:0046872
Vvi17g893 484 MobiDBLite consensus disorder prediction 1 31 - -
Vvi17g893 484 Coils Coil 100 120 - -
Vvi17g893 484 ProSiteProfiles Zinc finger C3H1-type profile. 411 439 IPR000571 GO:0046872
Vvi17g893 484 Gene3D - 90 167 - -
Vvi17g893 484 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Vvi17g893 484 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 13-RELATED 60 456 - -
Vvi17g893 484 MobiDBLite consensus disorder prediction 444 458 - -
Vvi17g893 484 SUPERFAMILY CCCH zinc finger 181 205 IPR036855 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g893 - - - vvi:100263823 960.288
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1246 Vvi17g893 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g893 Blo04g00708 Blo16g00248 . . . Bpe13g00218 Bma06g00242 . Cmo13g00808 Cmo18g00184 . . . . . Cpe20g00333 . . . . . . . . . . . . . . . Cone2ag0950 Cone16ag0051 . . Lsi02g00466 Csa01g00921 Chy12g01205 Cme12g01626 . . Bda11g01626 Bda14g00777 . Bpe15g00167 Bma03g00756 . Sed08g2465 . . Cma13g00777 Cma18g00208 Car13g00625 Car18g00202 Cpe09g00988 . Bhi08g01694 Tan05g2898 Cmetu12g0034 Lac10g0537 Hepe07g2163 . . Cla03g00322 Cam03g0338 Cec03g0330 Cco03g0344 Clacu03g0340 Cmu03g0946 Cre03g0639 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004285 3 1 3 2 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 1 1 2 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14240 PF00642 zf-CCCH 1.30E-08 CL0537 Vvi TF