Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g899 ATGATTAAAAAAATAATAAAAATAAAAATATTTAAACAGAAGCAGAGGGTAAAAAGTTTTGAAGCTAGAAGGCTTGAGACAATGGCTTCCTCTTTCAAATTGTTCTCTTCTCTGAGTTCTCTCACCACCATCCTCATCCTCATCCTATTGTCCTCCTTATGTACTGCTTCTACTGCTCCAACTGGGACTAATTCACCTCCCTTCAAGAGGATCTATGCCTTTGGAGACTCATACACTGACACAGGCAACACAAGGTCAGCCACTGGCCCAAATGCTTTCACCTATGTATCAAACCTCCCATATGGCAGCACCTTCTTTCATCACCCCACCAACCGATACTCCGATGGAAGGCTAGTGATCGACTTTGTTGCTCAGGCGCTGTCTTTGCCCTTCTTGCCACCTTACCGCAGCCAGAAGGCCAATACATCCACTGGTGTGAACTTTGCGGTTGCAGGGTCTACCGCTATACCCCATGAGTTCTTCGTGAAGAACAACCTAACTCTTGATATCACTCCTCAGTCAATCCAAACTCAGCTCATTTGGTTCAATGAGTTCTTGGAGAAGCAAGGATGCAGAGGGGCCACCAAAAACTCTGGTTGCACATTTGATGATACATTGTTCTGGGTTGGAGAGATCGGAGCCAATGACTATGCATACACTGTTGGATCTTCTGTGCCAGGCAGCACCATTCAGGAGCTTGGTATCAAGAGTATTACCAGCTTCCTACAGGCATTGCTGAAGAAAGGTGTGAAGTACCTTGTGGTCCAAGGTCTGCCACCAACTGGATGTCTCACACTGGCCTTGACACTGGCTCCTGATGATGACAGAGATGCAATAGGGTGTGTTGGGAGTGTGAACAAGCAGAGCTACAGCCACAACACCATCCTCCAAGCCAAGCTTCATGATCTCAGGGTACAATTTCCCCATGCTGTCATTGTTTATGCTGATTACTGGAATGCCTACCACACCATCATGAAGAATGGAGACAGGTATGGTTTCAAGGAGCCATTCAAAACTTGCTGTGGATCTGGTGGTGACCCCTATAATTTTGATGTGTTTGCCACCTGTGGCTCATCTTCTGCAAGTGCTTGTCCAAATCCTTCCCAGTACATCAATTGGGATGGAGTTCACCTCACAGAGGCCATGTATAAGGTGGTTGCTAATTCGTTTCTCCACGGTGGATTCTGTCACCCTCCATTTGATTACTTGTTAAGCAGGAAACAGCATTTGGGATGA 1236 46.12 MIKKIIKIKIFKQKQRVKSFEARRLETMASSFKLFSSLSSLTTILILILLSSLCTASTAPTGTNSPPFKRIYAFGDSYTDTGNTRSATGPNAFTYVSNLPYGSTFFHHPTNRYSDGRLVIDFVAQALSLPFLPPYRSQKANTSTGVNFAVAGSTAIPHEFFVKNNLTLDITPQSIQTQLIWFNEFLEKQGCRGATKNSGCTFDDTLFWVGEIGANDYAYTVGSSVPGSTIQELGIKSITSFLQALLKKGVKYLVVQGLPPTGCLTLALTLAPDDDRDAIGCVGSVNKQSYSHNTILQAKLHDLRVQFPHAVIVYADYWNAYHTIMKNGDRYGFKEPFKTCCGSGGDPYNFDVFATCGSSSASACPNPSQYINWDGVHLTEAMYKVVANSFLHGGFCHPPFDYLLSRKQHLG* 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 12208440 12210355 + Vvi17g899 Vvi17g899 779596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g899 411 Pfam GDSL-like Lipase/Acylhydrolase 71 389 IPR001087 GO:0016788
Vvi17g899 411 CDD SGNH_plant_lipase_like 71 393 IPR035669 -
Vvi17g899 411 PANTHER LIPASE/HYDROLASE FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 38 409 - -
Vvi17g899 411 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 38 409 - -
Vvi17g899 411 SUPERFAMILY SGNH hydrolase 67 390 - -
Vvi17g899 411 Gene3D SGNH hydrolase 59 393 IPR036514 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g899 - - - vvi:100251794 750.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1115 Vvi17g899 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g899 . . . . . . . . Cmo13g00810 Cmo18g00188 . . . . . Cpe20g00332 . . . . . . . . . . . . . . . Cone2ag0952 Cone16ag0048 . . . Csa01g00925 . Cme12g01625 . . . . . . . . Sed08g2463 . . Cma13g00778 Cma18g00212 . Car18g00204 Cpe09g00986 . Bhi08g01699 Tan05g2902 Cmetu12g0903 Lac10g0540 Hepe07g2160 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009369 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34