Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g9 ATGAGCTTTGATGAGAAGTTAGAAGAAGCGAGAGATGGGGAAGGTAGCATGAAAATCAATGAGATGGAACAGACTAAAGTCAGTCTCATGAGGACCTATGTTGAATCCCAGGATCCTTCTTCCCGGGACCCTTCTTCCCAGAAAGCGGATGATCTGATGATTAGAAGGTTCCTTCGTGCTCGTGATTTAGATGTAGAGAAGGCTTCTGCCCTCTTCCTCAGGTACCTGAAATGGAGACAAACATTTGTTCCAAATGGTTCCATTTCTTTGTCGCAGGTCCGAAATGAAGTGGCTCAGAACAAGATGTTTCTGCAAGGATTGGATAAACAAGGCCGACCCATAAGCGTTGTCCTTGGTGCTAAACATTTCCAATACCAAGGGAGTTTAGATGAGTTCAAACGTTTTTTAGTGTATGCTTTCGACAAAATATGCACAAGGATGCCACCAGGACAGGAGAAGTTTGTTGTTATTGGAGATCTTGAAGGATGGGGATATTCAAATAGTGATATGCGCGCATACCTTGGAGCTCTATCCATTTTGCAGGACTACTACCCTGAAAGACTTGGGAAGCTGTTTATTATTCATGCACCTTACATATTTATGGCAATATGGAAAATTGTTTACCCATTTATCGACAAAAATACCAAGAAGAAGATCGTGCTTGTGGAGAAGACAAAGCTGAGATCAACTCTACTTGAAGAAATTGATGAGAGCCAACTACCACAGATCTATGGAGGCAAACTGCCATTGGTTCCAATCCAAGACAGCTAA 771 42.28 MSFDEKLEEARDGEGSMKINEMEQTKVSLMRTYVESQDPSSRDPSSQKADDLMIRRFLRARDLDVEKASALFLRYLKWRQTFVPNGSISLSQVRNEVAQNKMFLQGLDKQGRPISVVLGAKHFQYQGSLDEFKRFLVYAFDKICTRMPPGQEKFVVIGDLEGWGYSNSDMRAYLGALSILQDYYPERLGKLFIIHAPYIFMAIWKIVYPFIDKNTKKKIVLVEKTKLRSTLLEEIDESQLPQIYGGKLPLVPIQDS* 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 52746 54869 + Vvi17g9 Vvi17g9 778706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g9 256 MobiDBLite consensus disorder prediction 1 19 - -
Vvi17g9 256 PANTHER OS03G0850700 PROTEIN 5 256 - -
Vvi17g9 256 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 90 252 IPR001251 -
Vvi17g9 256 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 5 256 - -
Vvi17g9 256 SUPERFAMILY CRAL/TRIO domain 93 249 IPR036865 -
Vvi17g9 256 CDD SEC14 103 247 IPR001251 -
Vvi17g9 256 SMART CRAL_TRIO_N_2 50 75 IPR011074 -
Vvi17g9 256 Pfam CRAL/TRIO domain 100 246 IPR001251 -
Vvi17g9 256 MobiDBLite consensus disorder prediction 1 23 - -
Vvi17g9 256 Gene3D - 4 255 IPR036865 -
Vvi17g9 256 SUPERFAMILY CRAL/TRIO N-terminal domain 19 85 IPR036273 -
Vvi17g9 256 SMART sec14_4 95 249 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g9 - - - vvi:100247551 504.597
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1356 Vvi17g9 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g9 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007871 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 36