Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g900 ATGTTGGATTATCAGCTAGCAAGGTCTTCTTTCCGAGACTCCCTTAAGGCTCTTGAGGCTGACATACAGCACGCCAATTTTCTGGCAGCTTCAATTCCCAGAACCAAGAATGGTTCTTGGCTTCAGATGAAATTGGCCTACAATAACTTAACGCCAATATTTCTTTTCTTTATCCAGTGGATGAATTGCTCATGTACATATCTGCTTCCCAGTTATTTAAACCTTGTCCACATAGTTATATACAAGGTGCACCCAGAAAGGCGACTAAAGATCTCATCATATGGAAGGAAAGCAACATTAAGGGAATTCTATGCTGTGATATTACCATCTCTTCAACATCTGCATAGTTATTCATCTGAGCTAGATTATGCTCAAGAGGAAGATCAAAGGTTGCAGCCAGTTGTTAGGAAGAGACCAGAGGAGAGGAAGAAGCTTTTGAATGTTGATTTGGAGAGAGAGGATGAATGTGGGATCTGCTTAGAGCCTTGCACCAAAATGGTGTTGCCTAACTGCTGCCATATGATGTGCATAAGCTGCTTCCGTGACTGGAACACAAAGTCAGAATCTTGCCCATTTTGTCGGGTTAGTCTAAAGAGAGTGAATTCAGGGGACTTATGGGTTCTCCCCTGCAGAGATGATGTTGTTGACATGGAAACTGTATCAAAGGAGGACGTGTTGCACTTTTATCTCTATATACACAACCTGCCAAAGGTTATTCCAGATGCTCTTTTCTTGATGTATTATGAATTCTTAATCTGA 759 41.37 MLDYQLARSSFRDSLKALEADIQHANFLAASIPRTKNGSWLQMKLAYNNLTPIFLFFIQWMNCSCTYLLPSYLNLVHIVIYKVHPERRLKISSYGRKATLREFYAVILPSLQHLHSYSSELDYAQEEDQRLQPVVRKRPEERKKLLNVDLEREDECGICLEPCTKMVLPNCCHMMCISCFRDWNTKSESCPFCRVSLKRVNSGDLWVLPCRDDVVDMETVSKEDVLHFYLYIHNLPKVIPDALFLMYYEFLI* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 12212621 12215044 - Vvi17g900 Vvi17g900 779597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g900 252 PANTHER RING FINGER PROTEIN 41, 151 5 252 - -
Vvi17g900 252 SUPERFAMILY RING/U-box 145 199 - -
Vvi17g900 252 Pfam Ring finger domain 154 194 IPR001841 -
Vvi17g900 252 ProSiteProfiles Zinc finger RING-type profile. 156 194 IPR001841 -
Vvi17g900 252 PANTHER F21J9.10 5 252 - -
Vvi17g900 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 216 IPR013083 -
Vvi17g900 252 SMART ring_2 156 193 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g900 - - - vvi:100251822 526.554
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1116 Vvi17g900 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g900 . . . . . Bpe13g00215 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0047 . . Lsi02g00469 Csa01g00926 Chy12g01201 . . . Bda11g01623 . . . . . . . . . . . . . . . . . . . . . Cla03g00325 Cam03g0342 Cec03g0334 Cco03g0347 Clacu03g0344 Cmu03g0949 Cre03g0642 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001225 3 4 0 0 3 1 3 3 3 3 1 2 2 2 3 2 1 2 4 2 3 3 3 3 3 2 3 4 6 2 76