Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g902 ATGGGAACTGGGTTTTGTACAAAACTGGGAAAAACATGGGCGAAAGCGGAGAAGGGTTTAAACGACGCCGTTTCTAGGAGTTTCGTCGGAAAATACTTCAAGTTACAGGCCAGAAAGACTTGCTTCACCAAGGAGCTCCGCGCCGCCACCGCCACGTTTCTCACCATGGCTTATATCCTCACCGTCAACGCCACCATTACCTGTCTCGCGAGGATCAGAAACGACCTCGTGGTGGTCACTGCGTTGTCCGCTATGATCGGCTCGTTTTTCATGGGTGTATTGGCGAATTTGCCCCTGGCTGTGGCTCCAGCCATGGGCCCAAATGCTTACTTCACTTACGACTTAGTGGGCTTCCATGGAACTGGGTCCATGACGTACGGAACTGGGCTCGCCGTTCTCTGTGTCGAGGGGTTAGCGTTTATCTTCTTATCGGCCTCTGGCCTGAGGGCTAAGGTAGCCCGGTTGATCCCCCAGTCAGTTAGGCTCGCATTTGCCGCTGGCATTGGACTGTTCATTGCTTTTGTGGGCCTCCAGGCCCACCAGGGAGTGGGCCTTGTTGGTCCTGATCCATCCACATTGATGCGGAGCCCTACGTTTTGGCTGGGCATGGTGGGGCTTGTGATTACGTGCACTGCAGTTACATATTTTCCTTACACCAAGGTTGGTGACACCAAATTCAACTACTTCAAGAAAGTCTGGGTGGCCCTAATGACGTTATTGTATGTGGATGTGCTCGCCACCACAGGGATACTGTACACAATGGCTGAGCTTGGGGGCTTTGTGGATGACAAGGGAAGCTTTGAGGGTGAATACATGGCGTACTTGGTTGATGCAGGGACGACAGTTGTGGCATCCACGCTCGGGGGATCTCCGGTTGCAACGTATGTGGAGTCATCGGCGGGGCTGAGGGAAGGCGGGCGGACAGGGCTGACAGCGGTGATTGTATCGTTTTATTTCATGCTGTCGTTGTTTTTTACTCCATTGTTAACCAGTGTACCTCCATGGGCAATAGGGCCATCACTGGTGATGGTTGGGGTGCTGATGATGAAGGTGGTGAAGGACATAGAGTGGGGTAACGTGAAGGATGCAGTGCCGGCTTTTGCCACCATGGTTCTCATGCCACTGACTTATTCCATAGCAAATGGGATCATAGGTGGAGCTGGAATCTACATTGTGCTGAGCTTGTATGATTATGTTGTGTGGGTGGTGAGGAGGGCGGCCAAGATGAGAAGAGAGAAAAATCAAGTGTCTGCTGCAGGTGGTGGAGGTCAAGATGTGGAAATGACTTAA 1290 52.17 MGTGFCTKLGKTWAKAEKGLNDAVSRSFVGKYFKLQARKTCFTKELRAATATFLTMAYILTVNATITCLARIRNDLVVVTALSAMIGSFFMGVLANLPLAVAPAMGPNAYFTYDLVGFHGTGSMTYGTGLAVLCVEGLAFIFLSASGLRAKVARLIPQSVRLAFAAGIGLFIAFVGLQAHQGVGLVGPDPSTLMRSPTFWLGMVGLVITCTAVTYFPYTKVGDTKFNYFKKVWVALMTLLYVDVLATTGILYTMAELGGFVDDKGSFEGEYMAYLVDAGTTVVASTLGGSPVATYVESSAGLREGGRTGLTAVIVSFYFMLSLFFTPLLTSVPPWAIGPSLVMVGVLMMKVVKDIEWGNVKDAVPAFATMVLMPLTYSIANGIIGGAGIYIVLSLYDYVVWVVRRAAKMRREKNQVSAAGGGGQDVEMT* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 12257608 12259195 - Vvi17g902 Vvi17g902 779599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g902 429 PANTHER ADENINE/GUANINE PERMEASE AZG2 3 66 IPR029950 GO:0005345|GO:0006863
Vvi17g902 429 PANTHER ADENINE/GUANINE PERMEASE AZG2 67 212 IPR029950 GO:0005345|GO:0006863
Vvi17g902 429 PANTHER ADENINE/GUANINE PERMEASE AZG2 231 424 IPR029950 GO:0005345|GO:0006863
Vvi17g902 429 Pfam Permease family 238 382 IPR006043 GO:0016020|GO:0022857|GO:0055085
Vvi17g902 429 Pfam Permease family 46 210 IPR006043 GO:0016020|GO:0022857|GO:0055085
Vvi17g902 429 PANTHER XANTHINE/URACIL PERMEASE C887.17-RELATED 3 66 IPR045018 GO:0015205
Vvi17g902 429 PANTHER XANTHINE/URACIL PERMEASE C887.17-RELATED 67 212 IPR045018 GO:0015205
Vvi17g902 429 PANTHER XANTHINE/URACIL PERMEASE C887.17-RELATED 231 424 IPR045018 GO:0015205
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g902 K06901 pbuG, azgA, ghxP, ghxQ, adeQ; adenine/guanine/hypoxanthine permease - vvi:100245103 758.059
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g902 . . . Bda15g00525 Bpe12g00684 . . . . . . . Car10g00067 . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00160 . . . . . . . . Cmo10g00076 . . . . . . . . . . . . . . . . . . . . . . . . Cme02g02056
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009517 1 2 1 0 1 1 2 1 1 1 1 1 1 1 0 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33