Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g903 ATGGAAAGTGGGTTTTGTTCACCAAGAACTGAAGCATTCCCAGCTGGTCTTCGTGTACTTGTTGTTGACGATGACCCAACGTGGCTCAAAATCCTTGAAAAAATGCTCAAGAAGTGTTCTTATGAAGTGACAACTTGCTGTTTAGCAAGAGATGCTCTGAACATGCTTCGGGAGAGAAAAGATGGTTTTGACATCGTGATTAGTGATGTTAACATGCCAGACATGGATGGCTTCAAACTCCTGGAACATGTCGGTCTAGAGATGGATCTCCCTGTAATTATGATGTCTGTCGATGGGGAAACAAGTAGAGTGATGAAAGGCGTTCAGCATGGAGCTTGCGATTATCTTCTCAAGCCTGTTCGGATGAAAGAGCTTAAGAATATATGGCAACATGTCTTTAGGAAGAAAATACATGAGGGAAAAGACCTGGGTGCAACTAGAAAACGAAAAGATATGGAAAACAGGAGGCATGATGATCAAGAGTTGGTTGATCCATCATCATCAAAGAAGGCTAGAGTGGTTTGGTCCATAGATCTACATCAGAAGTTTGTGGATGCTGTAAACCAGATTGGCTTTGATAAAGTTGGTCCCAAGAAAATTCTGGACTTGATGAATGTTCCTTGGCTGACAAGAGAAAACGTTGCCAGCCATCTGCAGAAGTACCGGCTCTACCTAAGTAGGTTGCAGAAGGAGAATGAACTAAAAACTTCTGAAGGGATGAAGCAGCAAGATTTCACTTGTCCTGCTGGAAGTTTAGGCTTTCAAACCTCTACTCTGATTCACCCAAAAGATGCAGCTAACTGCGATCTCAAATACACAGGCAACAATATGCTTCTCATAGACATGGGCACAAGAATCTGTCGTGAAGCTGATAAGAAAGGTACAGTTTCGATTTTGCCCATGGATCTCAAAGAAACTTCAACAAGTAATTTCCTTGACAGTCAGAGGGCAAATGTTAGTTCTCAAACCATTCTTTCCCGTCCTTTCAACTACCAATCAAGTCAGTCAAATACGACCAGCCAGAAGTGGAATGAAGCCCCAATGGAGCAATTCAAACAGCCGCCAAAACAAGAGCCTGAGCCGTATGCTCTACTAGAAGATGACTTTAGCCATGCACTGCAGTCTGCTCCACAGCATCTTGTCCAAGTTGATCTCCAATGTTCTGCTTATTCTGTTGGTCCAGGAACTGCAGTCCCAGAAAGAGATAAGCCCGGCTCTGTAATGATCACGCCTGTGCGCTCTCAATCCAGAAGCAACCATAGCCAGATTGTAAATCCAGAGACCTCAGATGCCATCTCCAACTTCAAAGTTGGCATGAAGAATCAGATGGTTGGTCTGAATTGCTTGAACGACTGTGAACCCATCCAACAAAAGATATTTACAGTAGGTGATTCCTCCTTGGGTTCTCAAGTCGGATGTGCTTATACCGAGAGTATTGGGCTCCAGGACATAGACCTTTTGGACTACTACAATTCAGAACTTATTGATGAACTGGAGACAAGCTACTATGCTGACTTGGGGTTAAACTGGGACAATGATTGTGATTCAGTTCAAAATCCTTTTGTAGATCAAAGTTTATTCACGGCACGAGCCGAGGCTTCAGGGGTTTGCTACCCTGGAGCTGAAGGCTTGCTGTTTTTCTTGTTGCCTCTCTTTCTCATACTAGTCTCTGCTCCTTCAGCCTCTTCAGCCTTCTGCTCTGCCTCTAGTATGGCCAACTGTATGCACCCAAAGAATATAGACATGATAACATACTCTTATTCATATAATTATGTTTGA 1779 43.34 MESGFCSPRTEAFPAGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLARDALNMLRERKDGFDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPVRMKELKNIWQHVFRKKIHEGKDLGATRKRKDMENRRHDDQELVDPSSSKKARVVWSIDLHQKFVDAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENELKTSEGMKQQDFTCPAGSLGFQTSTLIHPKDAANCDLKYTGNNMLLIDMGTRICREADKKGTVSILPMDLKETSTSNFLDSQRANVSSQTILSRPFNYQSSQSNTTSQKWNEAPMEQFKQPPKQEPEPYALLEDDFSHALQSAPQHLVQVDLQCSAYSVGPGTAVPERDKPGSVMITPVRSQSRSNHSQIVNPETSDAISNFKVGMKNQMVGLNCLNDCEPIQQKIFTVGDSSLGSQVGCAYTESIGLQDIDLLDYYNSELIDELETSYYADLGLNWDNDCDSVQNPFVDQSLFTARAEASGVCYPGAEGLLFFLLPLFLILVSAPSASSAFCSASSMANCMHPKNIDMITYSYSYNYV* 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 12269628 12274239 + Vvi17g903 Vvi17g903 779600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g903 592 CDD REC_typeB_ARR-like 19 133 - -
Vvi17g903 592 Pfam Myb-like DNA-binding domain 172 222 IPR001005 -
Vvi17g903 592 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 441 IPR045279 GO:0009736
Vvi17g903 592 SUPERFAMILY Homeodomain-like 168 227 IPR009057 -
Vvi17g903 592 MobiDBLite consensus disorder prediction 143 164 - -
Vvi17g903 592 SMART REC_2 17 129 IPR001789 GO:0000160
Vvi17g903 592 SUPERFAMILY CheY-like 16 139 IPR011006 -
Vvi17g903 592 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 170 223 IPR006447 GO:0003677
Vvi17g903 592 Pfam Response regulator receiver domain 19 127 IPR001789 GO:0000160
Vvi17g903 592 MobiDBLite consensus disorder prediction 330 347 - -
Vvi17g903 592 Gene3D - 17 156 - -
Vvi17g903 592 MobiDBLite consensus disorder prediction 330 357 - -
Vvi17g903 592 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11 2 441 - -
Vvi17g903 592 Gene3D - 166 229 - -
Vvi17g903 592 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14242 PF00072 Response_reg 3.50E-24 CL0304 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g903 - K14491 vvi:100250227 1055.82