Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g904 ATGCTCAAGAAGTGTTCTTATGAAATGACCACTTGCTGTGTAGCAAGAGATGCTTTGAGCATGCTCCAAGAAAGAAAAAATAGTTTTGACATCATAATTAGTGATGTTAACATGCCAGATATGGACGGCTTCCAACTCCTGGAACATCTTGAAGTTGAGATGGATCTCCCTGTCATTTTGATATCTGTTGATGGGGAAATGAATAGAGTTATGAAAGGCGTCCAAAGTGGAGCTTGCGATTATCTTCTCAAGCCTGTTCGAATGGAAGAGCTTAAGAATATATGGCAGCATGTCTTGAGAAAGAAAATACATGAGGGAAAAAACTCACAGGTGATGATAAGTAGATCATCAAATGAGTTGGATGATGGGCAGCAACTAAATGGAGGTGAGGTGAGTGCAACTAGAAAACGAAAAGATATGGAAAACAGAAGGCATGATGACCAAAAGTCAGTTGAGCCATCAACATCAAAGAAAGCCAGAGTGGTTTGGTCCATAGATCTACATCAGAAGTTTGTGGACGTTGTAACCCAGATTGGCTATGATAAAGCCAGGCCCAAGAAAATTCTGGACTTGATGAATGTTCCCTGGTTGACAAGAGAAAATGTTGCTAGTCATCTGCAGAAGTACAGGTTCTACCTGAGTAAGTTGCGGAAGGAGAACAAAGTAAAAAGTTCTCAAGGGATGATGCAGCAGGATTTCACCCGTCCTGCTGGAAGTTTTGGCTTTCAAACCTCAAATCTGATGCACCAAAAACATGCAGCTAATGGCAATCCCAAATACACAGGCAACAATATGCCTCTCATAGACAAGGGCACAAGATTCTGCCATGAAGCTGATAAGAAGGCTACAGCTTCCATTTTGCCTGTGGATCTCAAAGAAACTTCAGCAAGTAATTTCCTTGACTGTCAGAGAGCAAATGTTAGTTCTCAAACCATTCTTTCCCATCCTTTCAACCACCAATCAAGTCAGTCAAATACGACCACCCAGACGTGGAATGAAGTCCTAATGGAGCAACAATTCAAACAGCCTCCAAATCAAGATCCTGAGCTGTATGTTCTGCTAGATGATGACTTTAGCCATGCACTGCTGTCTGCTCCACAACATCTTCTCCAAGTTGATCTCCAATGTTCTGCTAATGCTGTTGGTCCGGGAACTTCAGTTCCAGAAAGAGATAAGCCCGGCTCTGTCATGATCATACCTCTGTGCTCGCAATCCAGAAAACCCACCCAACAACAGGTATTTGCAGTAGGCGATTCCTCCTTGGGGTCTCAAGTCGGATGTGCTTATACCGAGAGCATTGGGCTCCAGGACATGGACCTTTTCAACTACTACAATTCAGAAATTCTTGCTGAACTGGAGGAGACATGCTATTATGATCACTTGGGGTTTAAATGGAGTAATGATTGA 1407 42.71 MLKKCSYEMTTCCVARDALSMLQERKNSFDIIISDVNMPDMDGFQLLEHLEVEMDLPVILISVDGEMNRVMKGVQSGACDYLLKPVRMEELKNIWQHVLRKKIHEGKNSQVMISRSSNELDDGQQLNGGEVSATRKRKDMENRRHDDQKSVEPSTSKKARVVWSIDLHQKFVDVVTQIGYDKARPKKILDLMNVPWLTRENVASHLQKYRFYLSKLRKENKVKSSQGMMQQDFTRPAGSFGFQTSNLMHQKHAANGNPKYTGNNMPLIDKGTRFCHEADKKATASILPVDLKETSASNFLDCQRANVSSQTILSHPFNHQSSQSNTTTQTWNEVLMEQQFKQPPNQDPELYVLLDDDFSHALLSAPQHLLQVDLQCSANAVGPGTSVPERDKPGSVMIIPLCSQSRKPTQQQVFAVGDSSLGSQVGCAYTESIGLQDMDLFNYYNSEILAELEETCYYDHLGFKWSND* 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 12284469 12313319 + Vvi17g904 Vvi17g904 779601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g904 468 CDD REC_typeB_ARR-like 1 99 - -
Vvi17g904 468 SUPERFAMILY Homeodomain-like 155 215 IPR009057 -
Vvi17g904 468 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 373 IPR045279 GO:0009736
Vvi17g904 468 SMART REC_2 1 95 IPR001789 GO:0000160
Vvi17g904 468 Gene3D - 1 117 - -
Vvi17g904 468 Gene3D - 154 217 - -
Vvi17g904 468 MobiDBLite consensus disorder prediction 116 155 - -
Vvi17g904 468 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11 1 373 - -
Vvi17g904 468 MobiDBLite consensus disorder prediction 132 154 - -
Vvi17g904 468 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 158 210 IPR006447 GO:0003677
Vvi17g904 468 Pfam Response regulator receiver domain 2 93 IPR001789 GO:0000160
Vvi17g904 468 MobiDBLite consensus disorder prediction 116 131 - -
Vvi17g904 468 ProSiteProfiles Response regulatory domain profile. 1 99 IPR001789 GO:0000160
Vvi17g904 468 Pfam Myb-like DNA-binding domain 160 210 IPR001005 -
Vvi17g904 468 SUPERFAMILY CheY-like 1 112 IPR011006 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g1119 Vvi17g904 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14243 PF00072 Response_reg 4.30E-18 CL0304 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g904 - K14491 vvi:109121447 766.533