Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi17g904 | ATGCTCAAGAAGTGTTCTTATGAAATGACCACTTGCTGTGTAGCAAGAGATGCTTTGAGCATGCTCCAAGAAAGAAAAAATAGTTTTGACATCATAATTAGTGATGTTAACATGCCAGATATGGACGGCTTCCAACTCCTGGAACATCTTGAAGTTGAGATGGATCTCCCTGTCATTTTGATATCTGTTGATGGGGAAATGAATAGAGTTATGAAAGGCGTCCAAAGTGGAGCTTGCGATTATCTTCTCAAGCCTGTTCGAATGGAAGAGCTTAAGAATATATGGCAGCATGTCTTGAGAAAGAAAATACATGAGGGAAAAAACTCACAGGTGATGATAAGTAGATCATCAAATGAGTTGGATGATGGGCAGCAACTAAATGGAGGTGAGGTGAGTGCAACTAGAAAACGAAAAGATATGGAAAACAGAAGGCATGATGACCAAAAGTCAGTTGAGCCATCAACATCAAAGAAAGCCAGAGTGGTTTGGTCCATAGATCTACATCAGAAGTTTGTGGACGTTGTAACCCAGATTGGCTATGATAAAGCCAGGCCCAAGAAAATTCTGGACTTGATGAATGTTCCCTGGTTGACAAGAGAAAATGTTGCTAGTCATCTGCAGAAGTACAGGTTCTACCTGAGTAAGTTGCGGAAGGAGAACAAAGTAAAAAGTTCTCAAGGGATGATGCAGCAGGATTTCACCCGTCCTGCTGGAAGTTTTGGCTTTCAAACCTCAAATCTGATGCACCAAAAACATGCAGCTAATGGCAATCCCAAATACACAGGCAACAATATGCCTCTCATAGACAAGGGCACAAGATTCTGCCATGAAGCTGATAAGAAGGCTACAGCTTCCATTTTGCCTGTGGATCTCAAAGAAACTTCAGCAAGTAATTTCCTTGACTGTCAGAGAGCAAATGTTAGTTCTCAAACCATTCTTTCCCATCCTTTCAACCACCAATCAAGTCAGTCAAATACGACCACCCAGACGTGGAATGAAGTCCTAATGGAGCAACAATTCAAACAGCCTCCAAATCAAGATCCTGAGCTGTATGTTCTGCTAGATGATGACTTTAGCCATGCACTGCTGTCTGCTCCACAACATCTTCTCCAAGTTGATCTCCAATGTTCTGCTAATGCTGTTGGTCCGGGAACTTCAGTTCCAGAAAGAGATAAGCCCGGCTCTGTCATGATCATACCTCTGTGCTCGCAATCCAGAAAACCCACCCAACAACAGGTATTTGCAGTAGGCGATTCCTCCTTGGGGTCTCAAGTCGGATGTGCTTATACCGAGAGCATTGGGCTCCAGGACATGGACCTTTTCAACTACTACAATTCAGAAATTCTTGCTGAACTGGAGGAGACATGCTATTATGATCACTTGGGGTTTAAATGGAGTAATGATTGA | 1407 | 42.71 | MLKKCSYEMTTCCVARDALSMLQERKNSFDIIISDVNMPDMDGFQLLEHLEVEMDLPVILISVDGEMNRVMKGVQSGACDYLLKPVRMEELKNIWQHVLRKKIHEGKNSQVMISRSSNELDDGQQLNGGEVSATRKRKDMENRRHDDQKSVEPSTSKKARVVWSIDLHQKFVDVVTQIGYDKARPKKILDLMNVPWLTRENVASHLQKYRFYLSKLRKENKVKSSQGMMQQDFTRPAGSFGFQTSNLMHQKHAANGNPKYTGNNMPLIDKGTRFCHEADKKATASILPVDLKETSASNFLDCQRANVSSQTILSHPFNHQSSQSNTTTQTWNEVLMEQQFKQPPNQDPELYVLLDDDFSHALLSAPQHLLQVDLQCSANAVGPGTSVPERDKPGSVMIIPLCSQSRKPTQQQVFAVGDSSLGSQVGCAYTESIGLQDMDLFNYYNSEILAELEETCYYDHLGFKWSND* | 469 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 12284469 | 12313319 | + | Vvi17g904 | Vvi17g904 | 779601 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi17g904 | 468 | CDD | REC_typeB_ARR-like | 1 | 99 | - | - | |
Vvi17g904 | 468 | SUPERFAMILY | Homeodomain-like | 155 | 215 | IPR009057 | - | |
Vvi17g904 | 468 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 1 | 373 | IPR045279 | GO:0009736 | |
Vvi17g904 | 468 | SMART | REC_2 | 1 | 95 | IPR001789 | GO:0000160 | |
Vvi17g904 | 468 | Gene3D | - | 1 | 117 | - | - | |
Vvi17g904 | 468 | Gene3D | - | 154 | 217 | - | - | |
Vvi17g904 | 468 | MobiDBLite | consensus disorder prediction | 116 | 155 | - | - | |
Vvi17g904 | 468 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ARR11 | 1 | 373 | - | - | |
Vvi17g904 | 468 | MobiDBLite | consensus disorder prediction | 132 | 154 | - | - | |
Vvi17g904 | 468 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 158 | 210 | IPR006447 | GO:0003677 | |
Vvi17g904 | 468 | Pfam | Response regulator receiver domain | 2 | 93 | IPR001789 | GO:0000160 | |
Vvi17g904 | 468 | MobiDBLite | consensus disorder prediction | 116 | 131 | - | - | |
Vvi17g904 | 468 | ProSiteProfiles | Response regulatory domain profile. | 1 | 99 | IPR001789 | GO:0000160 | |
Vvi17g904 | 468 | Pfam | Myb-like DNA-binding domain | 160 | 210 | IPR001005 | - | |
Vvi17g904 | 468 | SUPERFAMILY | CheY-like | 1 | 112 | IPR011006 | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14243 | PF00072 | Response_reg | 4.30E-18 | CL0304 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi17g904 | - | K14491 | vvi:109121447 | 766.533 |