Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g905 ATGGGGAAGAAAACGAAAAAGCCCGGGAAAGGAAAGGAGAAAACAGAGAAAAAAACTGCGAAAGCTGAGGAAAAGAGAGCTCGCAGAGAGAACAAGAAGATCTCCGAAGAAGATGACATCGATGCCATTCTGTTGAGCATACAGAAGGAGGAGGCTAAGAAGAAGGAAGTTCACATCGACGAAAATGTCCCTGCGCCGACGCCTCGCTCCAACTGTTCCCTGACGATGAATCCCTTGAAAGAGACGGAGCTGATTCTTTATGGAGGTGAATTCTACAATGGCAACAAGACATTTGTATATGGTGATCTTTATCGACATGATATTGAGAAGCAGGAGTGGAAATTGATATCTAGCCCTAATAGTCCACCTCCTCGTAGTTCTCATCAAGCTGTTGCTTGGAAGAATTATCTCTATATCTTTGGTGGTGAGTTTACGTCCCCGAATCAAGAGTGCTTCCATCACTACAAGGACTTTTGGGTGTTGGACCTGAAAACAAATCAATGGGAACAACTAAATCTGAAAGGATGTCCAAGTCCACGGTCAGGTCATCGAATGGTTTTATACAAGCACAAGATTATTGTTTTTGGTGGCTTCTATGACACTCTCAGAGAAGTAAGGTATTTTAATGATTTGCATGTATTTGACCTGGATCAGTTCAAGTGGCAAGAAATAAAACCTAGGCTTGGTTCCATGTGGCCAAGTGCCAGGAGTGGTTTTCAGTTTTTTGTGTTCCAAGATGAGATCTTTCTGTATGGTGGCTACTCCAAAGAAGTTTCATCTGATAAAAACAACTCAGAGAAAGGAATTGTTCATTCAGACATGTGGTCCCTTGACCCTAGGACTTGGGAGTGGAACAAGGTGAAGAAATCTGGGATGCCTCCTGGACCTCGTGCTGGGTTTTCTATGTGTGTCCATAAAAAAAGGGCTGTGCTATTTGGGGGTGTAGTTGATATGGAAGTTGAAGGAGATGTAATGATGAGCTTATTCTTGAATGAGCTCTATGGATTCCAATTAGATACTCACCGCTGGTACCCATTGGAGCTGCGGAAGGAAAAATCAACTAAAGATAAGGTCAAAAAGAGTTCTGATAAAAAATATAATGGGGCTACTCTTGACAATAAGATTGGTTCTATTGATCTAGAGAAGTGTGAGGAGAATGATGGAGATGATAATTTGGAATCCCATGAAGAAGCAGCTGACCTAGAAAGTAGCATTGATGAAATATCTCGTCATATGACAACAAACATTACTGTTAATGATGGTGGACCATCCATCAAGTCTGATGGAAGACCTCATGAATCTGGTGCCCAATTGGATCTACAAAATTCCATTTCATCTGAGATTGTGAAACCTTGTGGCCGTATCAATTGCTCCATGGTTGTTGGAAAAGACACACTATATATTTATGGGGGCATGATGGAAGTCAAGGATCAAGAAATTACACTTGATGATTTGTATTGCCTTAATCTCAGCAAACTTGATGAATGGAAGTGCATCATACCGGCTTCTAAATCTGAGTGGATAGAAGCTTCAGAGGAAGAAGATGAGGATGAAGACGAAGATGATAGTGAAGATGAAGACTGCAATAGTGGAAGCAATAGTGATGAGACTGACGACGATGATGATGTAGAGGCTAAGGATGGATCAAGATCCCTCGAAATGGGAGATGCTGTTGCTATAATCAAAGGTGAAGGAAAGAATCTTCGGAGGAAGGAGAAGCGGGCTAGAATAGAGCAGATCAGAGCCAATCTTGGCCTTTCAGATTCACAGAGAACCCCAATTCCTGGAGAAACCTTGAAGGACTTCTATAAGCGTACCAATTTGTACTGGCAAATGGCAGCACATGAGCACACTCAACACACTGGAAAGGAGCTACGAAAGGATGGTTTTGATCTTGCTGAAGCTCGATACAGAGAGCTTAAACCAATCCTTGATGAGTTGGCCATACTAGAGGCAGAGCAGAAGGCTGAAGAGGCTGAAGGAGTGGAGACTAGTATGAGAAAGAGAGGCAACAAGAAAAACAGCAAGCGTTCAGCTCCCCAAAAGTAG 2049 42.46 MGKKTKKPGKGKEKTEKKTAKAEEKRARRENKKISEEDDIDAILLSIQKEEAKKKEVHIDENVPAPTPRSNCSLTMNPLKETELILYGGEFYNGNKTFVYGDLYRHDIEKQEWKLISSPNSPPPRSSHQAVAWKNYLYIFGGEFTSPNQECFHHYKDFWVLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIIVFGGFYDTLREVRYFNDLHVFDLDQFKWQEIKPRLGSMWPSARSGFQFFVFQDEIFLYGGYSKEVSSDKNNSEKGIVHSDMWSLDPRTWEWNKVKKSGMPPGPRAGFSMCVHKKRAVLFGGVVDMEVEGDVMMSLFLNELYGFQLDTHRWYPLELRKEKSTKDKVKKSSDKKYNGATLDNKIGSIDLEKCEENDGDDNLESHEEAADLESSIDEISRHMTTNITVNDGGPSIKSDGRPHESGAQLDLQNSISSEIVKPCGRINCSMVVGKDTLYIYGGMMEVKDQEITLDDLYCLNLSKLDEWKCIIPASKSEWIEASEEEDEDEDEDDSEDEDCNSGSNSDETDDDDDVEAKDGSRSLEMGDAVAIIKGEGKNLRRKEKRARIEQIRANLGLSDSQRTPIPGETLKDFYKRTNLYWQMAAHEHTQHTGKELRKDGFDLAEARYRELKPILDELAILEAEQKAEEAEGVETSMRKRGNKKNSKRSAPQK* 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 12313633 12324023 - Vvi17g905 Vvi17g905 779602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g905 682 MobiDBLite consensus disorder prediction 1 35 - -
Vvi17g905 682 SUPERFAMILY Kelch motif 82 498 IPR015915 GO:0005515
Vvi17g905 682 Gene3D - 46 371 IPR015915 GO:0005515
Vvi17g905 682 Coils Coil 12 37 - -
Vvi17g905 682 PANTHER KELCH DOMAIN-CONTAINING PROTEIN 1 669 - -
Vvi17g905 682 MobiDBLite consensus disorder prediction 656 682 - -
Vvi17g905 682 Pfam Galactose oxidase, central domain 84 132 - -
Vvi17g905 682 Pfam Galactose oxidase, central domain 135 187 - -
Vvi17g905 682 MobiDBLite consensus disorder prediction 507 549 - -
Vvi17g905 682 Pfam Kelch motif 236 290 IPR011498 GO:0005515
Vvi17g905 682 MobiDBLite consensus disorder prediction 509 543 - -
Vvi17g905 682 MobiDBLite consensus disorder prediction 12 35 - -
Vvi17g905 682 Pfam Domain of unknown function (DUF4110) 585 670 IPR025183 -
Vvi17g905 682 MobiDBLite consensus disorder prediction 416 435 - -
Vvi17g905 682 Pfam Galactose oxidase, central domain 453 501 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g905 - - - vvi:100256953 1262.28
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g905 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012920 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28