Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g907 ATGCTCAAATCAACCTTCACTCCCATTCTCTCGATTATCACCCCCAAACCCACAACCTCAAAACCCTCTAAAATCTTCACCAAAGCCTTCTCACAATCCCCACCAACTGTTCGAAAAAATGATTCACACAACCCCTCCACCACAACCCCACCACATAATCTCCCTCCTGTTTCAGCTTATATTCACCTCCCTTTCTGCAGAAAGCGCTGCCACTACTGTGATTTCCCAATTGTCGCTCTCGGGTCTTCTTTTACCCCACCACCTGAGGACGATCCCAGAATCTTGAACTACACCCAACTCATTTGTCGAGAAATTGAAGCGACAAAACCAGAATGCTATCCCACCCCACCTCTTGAAACAGTGTTTTTTGGAGGCGGCACGCCATCCCTTGTGCCGCCGAGGCTGGTTTCTGATATAGTTGAAGCGTTGAGGTTGAAGTTTGGGTTGTGCTTGGATGCTGAAATGTCCATGGAAATGGACCCTGGGACTTTTGATGCAGAGAAACTGAAGGGATTGATGGAGTTGGGTGTGAATAGGGTGTCTTTGGGAGTTCAGGCATTTCAGGAAGAGATGTTGAGGGGATGTGGGAGAGCACATGGTGTGAAGGAGATTTATGAGGCAATTGAGACCGTCAAGTCATGTGGGGTTGAGAACTGGAGTGTGGATCTCATCTCTTCTCTCCCTCACCAAACACCAGAAATGTGGGAGGAGAGTTTGCAGCTTGTCATTGAAGCGCAGCCTACCCATGTGTCGGTTTATGATTTGCAAGTTGAACAAGGCACCAAATTTGGAATACTGTACACACCAGGGGAGTTCCCTCTGCCCTCTGAAATCCAATCAGCAGACTTCTATAGAATGGCTTCCACCACCCTTTCTAATGCGGGCTATAATCATTATGAAATCAGCAGTTACTGCAAGGGTGGGTTTGAGTGCAAGCACAATCTTACCTATTGGGAGAACAAACCTTTCTATGGTTTTGGCCTTGGGTCTGCCAGTTATGTTGGTGGAGTGAGGTTTTCAAGGCCGAGAAAGATGAAAGAGTATATGGGTTATGTGCAGAGCTTGGAAACCGAGGTGGTGGGTTGTGGGGGTAATTCTGTTGATGCCAAGGATGTGGCAATGGATGTTGTGATGCTCTCTCTTAGAACTGCCAGAGGCTTGGATTTGAAGTCCTTCAGAAATTCATTTGGTAGCTCTTTTGTTGCCTCTCTTTGCATGGCCTATAGACCCTATGTGAAAAGTGGGCATGTGGTTTATGATGGGATTGAAGAACGGCTGGCATTTGTTCGGCTTAGTGATCCTGATGGTTTCCTCCTATCAAATGAATTGATATCACTAGCATTTCAGGCCATAGCTCCTTAA 1362 46.7 MLKSTFTPILSIITPKPTTSKPSKIFTKAFSQSPPTVRKNDSHNPSTTTPPHNLPPVSAYIHLPFCRKRCHYCDFPIVALGSSFTPPPEDDPRILNYTQLICREIEATKPECYPTPPLETVFFGGGTPSLVPPRLVSDIVEALRLKFGLCLDAEMSMEMDPGTFDAEKLKGLMELGVNRVSLGVQAFQEEMLRGCGRAHGVKEIYEAIETVKSCGVENWSVDLISSLPHQTPEMWEESLQLVIEAQPTHVSVYDLQVEQGTKFGILYTPGEFPLPSEIQSADFYRMASTTLSNAGYNHYEISSYCKGGFECKHNLTYWENKPFYGFGLGSASYVGGVRFSRPRKMKEYMGYVQSLETEVVGCGGNSVDAKDVAMDVVMLSLRTARGLDLKSFRNSFGSSFVASLCMAYRPYVKSGHVVYDGIEERLAFVRLSDPDGFLLSNELISLAFQAIAP* 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 12376734 12378241 - Vvi17g907 Vvi17g907 779604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g907 453 SMART MiaB 56 286 IPR006638 GO:0003824|GO:0051536
Vvi17g907 453 MobiDBLite consensus disorder prediction 30 48 - -
Vvi17g907 453 MobiDBLite consensus disorder prediction 30 53 - -
Vvi17g907 453 PANTHER RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL 33 450 - -
Vvi17g907 453 Gene3D tm_1862 like domain 64 268 IPR023404 -
Vvi17g907 453 PANTHER COPROPORPHYRINIGEN III OXIDASE 33 450 IPR034505 -
Vvi17g907 453 Pfam Radical SAM superfamily 61 242 IPR007197 GO:0003824|GO:0051536
Vvi17g907 453 SUPERFAMILY Radical SAM enzymes 38 443 - -
Vvi17g907 453 CDD Radical_SAM 66 209 - -
Vvi17g907 453 TIGRFAM hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 58 403 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Vvi17g907 453 SFLD HemN-like, clustered with heat shock genes 56 445 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Vvi17g907 453 SFLD anaerobic coproporphyrinogen-III oxidase like 56 445 - -
Vvi17g907 453 ProSiteProfiles Radical SAM core domain profile. 51 297 IPR007197 GO:0003824|GO:0051536
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g907 - - K07739 vvi:100241088 907.516
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g907 . . Bda06g00631 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0202 Cone19ag0190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011201 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31