Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g908 ATGTCGAAGCCTCACAGGTGTCCACATATCGCAACCACGGGGAATATTTGTGTTTATTGCCCTGGAGGACCTGATTCTGATTTTGAGTACAGTACACAGTCGTACACTGGATACGAGCCCACCAGCATGCGCGCGATTCGTGCTAGATATAACCCATATGTCCAGGCTAGAAGCAGGATCGATCAGCTGAAGCGGCTGGGTCATAGTGTAGACAAGGTAGAGTTCATTTTAATGGGTGGTACCTTCATGTCACTGCCAGCCGAGTACCGTGATTACTTTACAAGGAATCTACATGATGCTTTGTCAGGACACACTTCTGCCAATGTTGAAGAGGCTGTTGCCTACTCAGAGCATAGTGCAATAAAGTGTATTGGAATGACCATTGAAACGAGGCCAGATTACTGTCTTGGACCTCATTTGCGGCAAATGCTTTCTTATGGTTGTACACGGCTGGAGATTGGAGTTCAAAGCACCTACGAGGATGTTGCCCGTGACACTAATAGAGGACATACAGTAGCTGCTGTGGCTGATTGTTTTTGCTTGGCCAAGGATGCTGGTTTCAAGGTTGTTGCTCATATGATGCCTGACCTTCCAAATGTTGGGGTAGAGAGGGACTTGGAAAGTTTCCGGGAGTTTTTTGAAAGCCCTATGTTTAGAGCTGATGGGCTCAAAATATATCCAACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTTTGGAAAACGGGCAGGTATAGGAATTACCCACCTGAGCAACTTGTAGACATTGTAGCAAGAATTCTAGCCATGGTACCCCCTTGGACTCGTGTTTATAGAGTTCAGAGGGATATTCCTATGCCTCTGGTTACTTCTGGGGTTGAGAAAGGAAATCTACGGGAGCTAGCTTTAGCTAGGATGGATGACTTGGGCTTGAAATGCCGTGATGTTCGGACACGTGAAGCTGGAATCCAGGACATCCACCACAAAATTAAGCCAGAGGAGGTTGAGCTTGTTCGCCGTGATTATACAGCAAATGAAGGTTGGGAAACTTTTCTTTCATATGAGGATATACGCCAGGATATTCTTGTTGGGTTGTTGCGCTTGCGCAAATGTGGGCGAAACACTACTTGCCCAGAGCTGATTGGCAGATGTTCAATTGTTCGTGAACTCCATGTTTATGGGACTGCAGTCCCAGTCCATGGACGGGATGCTGACAAGCTTCAACACCAGGGTTATGGTACACTTCTGATGGAGGCGGCAGAACGGATTGCTGGGAGAGAGCACAGATCAACAAAAATAGCAGTTATTTCTGGTGTTGGAACGCGTCATTACTACAGGAAACTGGGGTATGAGCTTGAAGGGCCGTACATGGTGAAATATCTTGTATGA 1368 46.56 MSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPAEYRDYFTRNLHDALSGHTSANVEEAVAYSEHSAIKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPMFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHKIKPEEVELVRRDYTANEGWETFLSYEDIRQDILVGLLRLRKCGRNTTCPELIGRCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEAAERIAGREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLV* 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 12379861 12388649 - Vvi17g908 Vvi17g908 779605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g908 455 Gene3D - 306 455 - -
Vvi17g908 455 SMART MiaB 6 259 IPR006638 GO:0003824|GO:0051536
Vvi17g908 455 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 304 455 IPR000182 GO:0016407
Vvi17g908 455 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 1 454 IPR039661 -
Vvi17g908 455 PANTHER ELONGATOR COMPLEX PROTEIN 3 1 454 IPR034687 -
Vvi17g908 455 Pfam Radical SAM superfamily 15 210 IPR007197 GO:0003824|GO:0051536
Vvi17g908 455 Pfam Acetyltransferase (GNAT) family 307 443 IPR000182 GO:0016407
Vvi17g908 455 SUPERFAMILY Radical SAM enzymes 27 266 - -
Vvi17g908 455 SFLD Radical SAM 1 454 IPR007197 GO:0003824|GO:0051536
Vvi17g908 455 TIGRFAM ELP3: radical SAM enzyme/protein acetyltransferase, ELP3 family 1 454 IPR034687 -
Vvi17g908 455 CDD Radical_SAM 4 251 - -
Vvi17g908 455 PIRSF HAT_Elp3 1 455 IPR034687 -
Vvi17g908 455 SFLD ELP3-like 1 454 IPR034687 -
Vvi17g908 455 ProSiteProfiles Radical SAM core domain profile. 6 280 IPR007197 GO:0003824|GO:0051536
Vvi17g908 455 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 263 450 IPR016181 -
Vvi17g908 455 Pfam Radical_SAM C-terminal domain 221 299 IPR032432 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g908 K07739 ELP3, KAT9; elongator complex protein 3 (tRNA uridine(34) acetyltransferase) [EC:2.3.1.-] - vvi:100263356 937.176
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g908 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0203 Cone19ag0191 . . . . . . Bda11g01622 . . Bpe15g00195 Bma03g01280 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012251 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 0 0 1 1 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14245 PF04055 Radical_SAM 1.20E-18 CL0036 Vvi TR