Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g909 ATGTCAACCCTTCCAAAAGAACTGGGCTGGACTTCTGATCACATGTATCAGTACCAAGGCTTTTGGTACACTTCCATGAATCTAGAAGGAGTCATGTGGGCGCAACAGCACTTTAAGGCGACACATCTTGATGTTTTTTTGGCCTCCACTCCCAAATCAGGCACAACATGGCTTAAGGCTCTCATGTTTGCGATTATGAATCGAACCAGGTTTGATTTTTCAACACACCCATTGCTCACATCCAACCCTCATGAGCTTGTTACTTTGTTAGAATTCTACTTCCACTGGAACATCCCTTATCCCAACCCTAATACCCCACTTCCCAAGACACAACTCTTCCAAACTCATATCCCTTTCACCTCATTACCTGAATCTATTGTCGACTCTCAATACATAAATCTGGCACCCCTTTCCATTGAAGAGGCAATTGAGCAATTTTGCAAGGGAGTTTCTCTTTTTGGACCCTTCTGGGATCATGTATTAGGGTATTGGAAAGTAACACGAGACTTTATCATTGAGAAGAAAAAGTTTTTCCAAAAAGGCGAGGTTGGAGACTGGAAGAATCATCTGACCACTGAGATGGGCGACTGCCTAAACAGGATCATGGACCAAAAATTGGACGGTTCGGGTTTGACATTCCATGATTCCTTGGAGACATGA 660 43.33 MSTLPKELGWTSDHMYQYQGFWYTSMNLEGVMWAQQHFKATHLDVFLASTPKSGTTWLKALMFAIMNRTRFDFSTHPLLTSNPHELVTLLEFYFHWNIPYPNPNTPLPKTQLFQTHIPFTSLPESIVDSQYINLAPLSIEEAIEQFCKGVSLFGPFWDHVLGYWKVTRDFIIEKKKFFQKGEVGDWKNHLTTEMGDCLNRIMDQKLDGSGLTFHDSLET* 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 12455523 12456465 + Vvi17g909 Vvi17g909 779606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g909 219 PANTHER SULFOTRANSFERASE 136 169 - -
Vvi17g909 219 PANTHER SULFOTRANSFERASE 172 208 - -
Vvi17g909 219 PANTHER SULFOTRANSFERASE 2 129 - -
Vvi17g909 219 Pfam Sulfotransferase domain 44 129 IPR000863 GO:0008146
Vvi17g909 219 Pfam Sulfotransferase domain 173 210 IPR000863 GO:0008146
Vvi17g909 219 PANTHER SULFOTRANSFERASE SULT 136 169 - -
Vvi17g909 219 PANTHER SULFOTRANSFERASE SULT 2 129 - -
Vvi17g909 219 PANTHER SULFOTRANSFERASE SULT 172 208 - -
Vvi17g909 219 Gene3D - 133 169 IPR027417 -
Vvi17g909 219 Gene3D - 1 132 IPR027417 -
Vvi17g909 219 Gene3D - 170 216 IPR027417 -
Vvi17g909 219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 214 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g909 - - K22312 vvi:100267913 234.572
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g909 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001986 24 0 3 15 6 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 13 66