Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g917 ATGGCTTCTGATCTGTTGAGTGAAGAAAGGAGTGATGAGGTGAGTGGTCTTGATACCAGCCTTTCGGCTCAGGCTTACTATTCTCGCTCTTATCTGCCCATATTCCAGAATGGTTCTGCTACTAATTGGTTCCACTACTCGGATGAAGCTAGAAACCACAAGAGGCTTAAACGAACCCAAAGTATAGCTGAATCCATCGGAAGTAATAGCAGCCTTTATAGTGGTGGAAAAAGCTATAGTAACAGCAGCAGCAGTTTTATCAACCGCAGTAGCAGTACTAATAGCTTGAATAGCTTGCCAAGGCTCCATTTTCGAGATCATATATGGACTTATACTCAAAGATACCTTGCAGCTGAAGCTGTGGAAGAAGCAGCAGCAGCCATGATCAGTGCTGCAGAAGGTGAAGTTGAGGAAGATGGAAGTGGGGACGGGATGAGGTTGGTTCAGCTTCTCATTGCTTGTGCTGAAGCTGTGGCTTGTCGTGACAAGACACATGCCTCATCGCTATTATCAGAGCTTCGAGCCAATGCTTTAGTCTTCGGCTCTTCATTCCAGCGTGTGGCATCCTGCTTTGTCCAAGGCCTCGCGGACCGGCTGTCTTTGGTTCAACCACTTGGGGCAGTTGGTTTTATAGCACCGTCCATCAACCCATTGGACACAGCCTGGGAGAAAAAGGAGGAAGCCTTACGTCTTGTTTATGAAATTTGCCCACATATTAAGTTTGGTCACTTTGTGGCCAATGCTTCAATATTGGAAGCCTTTGAGGGAGAGAATTTTGCCCATGTCGTTGACTTGGGCATGACACTTGGCCTAGCACATGGTCAGCAATGGCGCCAGCTGATCCATAGCCTAGCCAATCGTGCAGGCCGACCACCACGTCGTCTTAGGATCACTGGTGTCGGCCTTTGTGTAGACCGGTTCAAAATTATAGGTGAGGAGCTTGAGGCTTACGCCCAGGACTTGGACATAAACTTGGACATCCTTCAATTGCACTGTGTGGTCAAGGAAAGCCGCGGAGCTTTAAACTCGGTCCTGCAGAAAATCAACGAGCTCTCACCCAAGGTTTTAGTCCTGGTTGAGCAGGACTCAAGCCATAACGGACCCTTCTTTCTTGGGAGGTTCATGGAAGCACTTCATTACTACTCTGCAATCTTTGACTCCCTAGAAGCAATGCTACCTAAGTATGATACTAGGCGCGCCAAAATAGAACAGTTTTACTTTGGGGAGGAGATAAAGAACATAGTGAGTTGCGAAGGGCCAGCAAGGGTGGAGCGGCATGAGAGGGTGGACCAGTGGCGCAGGAGGATGAGTCGTGCCGGGTTTCAGGCTGCACCCATTAAGATGATGGCTCAGGCCAAGCAATGGCTGGGGAAAGTTAAGGCCTGTGAAGGGTATAATATTATGGAAGAGAAGGGATGCTTGGTGCTGGGCTGGAAATCAAAGCCTATTGTGGCAGCCTCTTGCTGGAAATGCTGA 1476 48.58 MASDLLSEERSDEVSGLDTSLSAQAYYSRSYLPIFQNGSATNWFHYSDEARNHKRLKRTQSIAESIGSNSSLYSGGKSYSNSSSSFINRSSSTNSLNSLPRLHFRDHIWTYTQRYLAAEAVEEAAAAMISAAEGEVEEDGSGDGMRLVQLLIACAEAVACRDKTHASSLLSELRANALVFGSSFQRVASCFVQGLADRLSLVQPLGAVGFIAPSINPLDTAWEKKEEALRLVYEICPHIKFGHFVANASILEAFEGENFAHVVDLGMTLGLAHGQQWRQLIHSLANRAGRPPRRLRITGVGLCVDRFKIIGEELEAYAQDLDINLDILQLHCVVKESRGALNSVLQKINELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLEAMLPKYDTRRAKIEQFYFGEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIKMMAQAKQWLGKVKACEGYNIMEEKGCLVLGWKSKPIVAASCWKC* 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 12556744 12558304 - Vvi17g917 Vvi17g917 779614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g917 491 Pfam GRAS domain family 328 490 IPR005202 -
Vvi17g917 491 PANTHER DELLA PROTEIN RGL1-LIKE 327 490 - -
Vvi17g917 491 PANTHER DELLA PROTEIN RGL1-LIKE 74 326 - -
Vvi17g917 491 ProSiteProfiles GRAS family profile. 138 490 IPR005202 -
Vvi17g917 491 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 327 490 IPR005202 -
Vvi17g917 491 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 74 326 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g917 - - - vvi:100263271 889.797
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1124 Vvi17g917 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g917 . Blo16g00254 . . . Bpe13g00212 Bma06g00247 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0038 . . . . . . . . Bda11g01611 . . Bpe15g00201 Bma03g01273 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006339 3 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14246 PF03514 GRAS 2.80E-54 CL0063 Vvi TF