Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g919 ATGCCGCGTCCGATGAGCTTCTTTGTGGAAGAAGATGAAGATATGCTGATGGACGCCGATGGCAACAATGTCGAGCACGTTCCTCAGCACGACCCCCACCGCCACCATCCTCAGCGTCAGCACCTCCAGCAGATACTTCTGACTGAGAGCAGTGGAGAGGACATCGAAATCAAAGTGCCCAGAAGGCGAGCCGAGACATGGGTCCATGATGAAACTCATAGCCTCATCGCATTCCGTAGAGAATTGGATGAGTTCTTCAATACTTCCAAATCCAACAAGCATCTCTGGGAGCAAATTGCTGCTAGAATGAGCGAACTGGGGTATGATCGGACCGCAGCCATGTGTACTGACAAGTGGAGAAACCTGCTGAAGGATTACAAGAAGGCGCAGCAGCGTGATGGAGGAAGCGGGAAGATGTATTACGAAGAGCTCGAAGAGTTTTATGCGGAGAAGAAGAGAAATGATCCGTACAGGAAGATTACTTCTTCTAGGGCTCCATTCATGCACATTTCCGAAAAAGATGGTCGCAAGGCACGATTTAATTCTGAAAAGGTTATGGATTATGACCAACACAGTCTTGGCATTAGTGAAGCTGAAGTTGTTGCAGCCAATGGACTTCCCCCCTGGAATCGGAAAGAAACCCCTGGAAGTGGCACGGAGAATGAGTCTGCATATACAGGGAGGGTTATATGGGTGAATTATGGGGAATGCACTAAGAGGATTGGCATTGATGGCTCCTCAGATTCAATCAAGGAGGCAATCAGGTCTTCTTTTGGCCTAAGAACCAATCGGGCATTTTGGTTGGAGGATGAAAATGAGATAGTGCGAAGTCTTGACAGAGACATGCCATTGACAACTTATACTCTTTGTCTTGATGCAGGATTGACTATAAAAATCTGTCTTTATGACCAGCCATGCCAGCTACTACCAGTTCGTACTGAGGAGAAAACGTTTTACTGTGAAGATGATCTTCGCGATTTTCTCCACCACCGTGGCTGGATGGGTCTAAGAAGATTTAAGCTGCTATAA 1029 47.04 MPRPMSFFVEEDEDMLMDADGNNVEHVPQHDPHRHHPQRQHLQQILLTESSGEDIEIKVPRRRAETWVHDETHSLIAFRRELDEFFNTSKSNKHLWEQIAARMSELGYDRTAAMCTDKWRNLLKDYKKAQQRDGGSGKMYYEELEEFYAEKKRNDPYRKITSSRAPFMHISEKDGRKARFNSEKVMDYDQHSLGISEAEVVAANGLPPWNRKETPGSGTENESAYTGRVIWVNYGECTKRIGIDGSSDSIKEAIRSSFGLRTNRAFWLEDENEIVRSLDRDMPLTTYTLCLDAGLTIKICLYDQPCQLLPVRTEEKTFYCEDDLRDFLHHRGWMGLRRFKLL* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 12796713 12806173 + Vvi17g919 Vvi17g919 779616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g919 342 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 11 340 - -
Vvi17g919 342 PANTHER - 11 340 - -
Vvi17g919 342 CDD GT1 65 129 - -
Vvi17g919 342 ProSiteProfiles Myb-like domain profile. 59 123 IPR001005 -
Vvi17g919 342 Pfam Myb/SANT-like DNA-binding domain 66 146 IPR044822 -
Vvi17g919 342 Gene3D - 67 129 - -
Vvi17g919 342 SUPERFAMILY Homeodomain-like 66 125 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1226 Vvi17g919 ECH
Vvi1g1139 Vvi17g919 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14247 PF13837 Myb_DNA-bind_4 8.70E-19 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g919 - - vvi:100265024 680.633