Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g920 ATGGGTAAGTGTTCTAGTTTTAGGAAGATCAAGATCGGAATTAATGGATTTGGAAGGATCGGCCGATTGGTGGCCAGAGTGGCACTGCAGAGAGACGATGTTGAGTTGGTTGCAGTCAACGATCCATTCATCACCACTGATTACATGACCTACATGTTTAAGTACGACAGTGTTCACGGTCAGTGGAAGCATCATGAACTCAAGGTCAAGGACTCTAACACCCTTCTCTTTGGTGAGAAGCCAGTCACCGTCTTTGGTATTAGGAACCCAGAGGAGATTCCATGGGGTGAGACCGGAGCTGAATTTGTTGTTGAGTCAACTGGTGTGTTCACTGACAAGGACAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAGGTTGTCATCTCAGCCCCAAGCAAAGATGCTCCTATGTTCGTTGTTGGAGTTAACGAGAAGGAATACAAGCCAGAACTCCACATTGTTTCCAATGCTAGTTGCACTACAAACTGCCTTGCTCCTCTTGCGAAGGTTATTAATGACCGATTTGGCATTGTGGAGGGTCTTATGACAACTGTTCACTCGATTACTGCCACCCAAAAGACTGTTGATGGCCCTTCAATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATCATTCCTAGCAGCACTGGAGCTGCCAAGGCTGTTGGCAAAGTGTTGCCTTCATTGAATGGGAAATTGACTGGAATGGCTTTCCGTGTTCCTACTGTTGATGTGTCGGTGGTTGACCTCACTGTCAGGCTGGAGAAGGCTGCTACCTATGAGCAAGTTAAAGCTGCCATCAAGGAGGAGTCAGAGGGAAAAATGAAGGGAATCTTGGGTTACACTGAAGATGATGTTGTTTCCACAGACTTCATCGGTGACAACAGGTCCAGCATCTTTGATGCCAAGGCTGGAATAGCACTCAACGAGAAGTTCTTGAAGATTGTCGCTTGGTATGACAATGAATGGGGTTACAGCTCCCGTGTGATCGACTTGATTGTCCACATGGCATCCTGCAAATAA 1032 47.0 MGKCSSFRKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDSNTLLFGEKPVTVFGIRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELHIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMAFRVPTVDVSVVDLTVRLEKAATYEQVKAAIKEESEGKMKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALNEKFLKIVAWYDNEWGYSSRVIDLIVHMASCK* 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 12806851 12811985 + Vvi17g920 Vvi17g920 779617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g920 343 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 165 322 IPR020829 GO:0016620
Vvi17g920 343 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 176 IPR036291 -
Vvi17g920 343 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 10 113 IPR020828 GO:0051287
Vvi17g920 343 Gene3D Dihydrodipicolinate Reductase; domain 2 159 324 - -
Vvi17g920 343 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 159 322 - -
Vvi17g920 343 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 119 132 IPR020831 GO:0016620
Vvi17g920 343 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 154 172 IPR020831 GO:0016620
Vvi17g920 343 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 181 197 IPR020831 GO:0016620
Vvi17g920 343 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 238 255 IPR020831 GO:0016620
Vvi17g920 343 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 278 293 IPR020831 GO:0016620
Vvi17g920 343 SMART gp_dh_n_7 10 160 IPR020828 GO:0051287
Vvi17g920 343 Gene3D - 10 337 - -
Vvi17g920 343 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 5 341 IPR020831 GO:0016620
Vvi17g920 343 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 5 341 - -
Vvi17g920 343 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 11 334 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Vvi17g920 343 PIRSF GAPDH 8 343 IPR020831 GO:0016620
Vvi17g920 343 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 158 165 IPR020830 GO:0016620
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g920 K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] - vvi:100233024 656.366
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g1143 Vvi17g920 ECH
Vvi14g1225 Vvi17g920 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g920 . . . . . . . . Cmo13g00818 Cmo18g00195 . . . . . Cpe20g00323 . . . . . . . . . . . . . . . . Cone16ag0036 . . Lsi02g00479 Csa01g00941 Chy12g01188 Cme12g01610 . . . . . Bpe15g00204 Bma03g01272 . . . . Cma13g00787 Cma18g00218 Car13g00636 Car18g00213 Cpe09g00978 . Bhi08g01716 Tan05g2926 Cmetu12g0879 . Hepe07g2148 . . Cla03g00337 Cam03g0352 Cec03g0343 Cco03g0358 Clacu03g0353 Cmu03g0958 Cre03g0651 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001932 1 3 2 4 3 1 2 1 1 3 1 1 3 3 3 4 1 3 2 1 3 3 3 1 1 3 2 2 3 3 67