Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g922 ATGGCGTCGGACGTGGAAGGGGAGAAGCTATGGGAGGAGGTTCTGAGGAAGATGCTCCCTGTGGGTGCTCCATTGCCCGACGAAGAACATCTTGATTACTCGATCGCAGTCGAATACGAGGGCCCTCCGGTGCCATATCGAGTCCCTATAGTTGATCCTTTGGATGTTGATTCTCTCTCTATTCGCAGTTCTTCCATGGTTTCTGTTTCGGCGTCGGACCTTCAGTCGATTCCAGTTGCCGCCCCAATACTGCCGGTGGTGAAGGTAACAAACTATTCGAGGTTCAATCGAGTCAGAAATGGAGCGTCTTTGAGGGAACTACGGAGTCCGGTGGAGAGTGGGCGGTCTTCGTCCTCAGTGTGGAGAGGTCAATTGGGATCGCGGAACAGCGAGGTCGAAGATTCGGATTGCGGAAATGGAAGGGGCGAGCTGTTCAGTTCGGCCTCATCGGTTCAGGATCCAAATTCAGAGAGGGAGGCTTGCATTGTATGTGATGCGAGATATTGTAAAAATTGTCTGCTTAAGGCGATGGGCTCAATGCCAGAGGGTCGGAAATGTGTTAGTTGCCTAGGGCAGCCTATAAACGAGTCAAAGAGGTCCAGTTTGGGTAAATATTCTAGAATGCTGTCCAAGGCATGCAGTCCTTTAGAAGTTGGGCAGATAATGAAGGCTGAGAAGGAATGCTTGGCAAATCAGCTTCGTCCTGAGCAGCTTATTGTGAATGGGAGACAGCTACGGCAAGAGGAGTTGGCTGAGGTTTTAGGTTGCTCAATCCCTCCGCAGAAGTTGAAGCCTGGGAGGTATTGGTATGATAAGGATTCAGGCCTCTGGGGAAAGGAGGGAGAAAAACCCGATCGGATTATAAGCTCAAAATTGAATATTGGGGGTAAGTTGCAGTTGGATGCTAGCAATGGGAGCACAAAAGTCTTCATAAATGGGCGTGAAATTACGAAGATTGAGCTGAGAGTATTAAAGATGGCCAATGTACAGTGCCCTAGGGATACTCACTTTTGGTTGTATGATGATGGATCTTATGAAGAAGAAGGTCAAAATAACATAAAAGGAAACATATGGGGAAAGGCATCCACTCGTTTCATTTGTTCATTATTTTCATTGCCTGTACCACCTGGAATTTTCCAAGGGCCAAAAGAAGATCCAACTGCATTTTCAAGTAGATCTGTGCCTGAGTATTTGGAGCAGGGAAGAGTTCAGAAACTTCTGTTGTTTGGGTTGGAAGGATCTGGAACCAGCACTCTCTTCAAGCAGGCAAAGTATTTATATGGAAACAAGTTCACTCCACAAGAGCTTCAGAGTATCAAACTTATGATTCAAAGTAATATGTACAAGTATCTCAGCCTCTTACTTGAGGGACGCGAACGATTTGAAGAGGAGGCTTTGATGGAAAGAAAAAATAATGTTTCAGATGCTGAAGGGTCTGATCCAGGTGAAACAGGAGTTGATCAAAGTAAGCCATGCATCTATTCAATCAACCAAAAGTTCAAACATTTTTCTGACTGGTTACTGGGAATCATGGCTATGGGAGACTTGGATGCTATTTTCCCTGCCGCAACACGTGAATATGCTCCTCTTGTAGACGAGCTTTGGAAGGATCCTGCCATCCAGGAAACTTACAAGAGAAGAGAGGAATTGCTTTTTCTTCCTGATGTTGCTAAATACTTCTTGGATCGGGCTATTGAGATATCAAGCAATGAGTATGAACCTTCACAGAAAGACATTTTATATGCTGAAGGAGTCACTCAGAGCAATGGTCTTGCCTTCATGGAATTCTCATTTGATGATCGAAGTCCCATGTCTGAGACATATAACGAGAATTTGGAATGCCCACCTCCATCGTCCAAGTACCAACTAATCCGAATAAATTCCAAGGGATTGCATGATGGGTGCAAATGGCTGGACATGTTTGAGGATGTAAGGGCAGTGATTTTCTGTGTTGCTTTAAGTGACTATGACCACATGTACACTGATAGTGCGGGTTCTCTTTATAATAAAATGCTGGCAAGCAGAGATTTGTTTGAGAGTTTGGTGAGGCACCCTTGCTTTATAGACACCCGTTTTGTGCTCCTCCTTAACAAATATGATGCATTTGAAGAAAAGATAAACCGTTCTCCATTAGCAGTTTGTGAATGGTTTTGGGAGTTTAGTCCGGTGAGGCCCCATCACAACAATCAGTCGTTGGCACACCAAGCTTATTACTATGTGGCAATGAAATTCAAAGATCTGTATCATTCCATCAGTAGTCGGAAGTTGTTTGTGTGGAAGACCAGGGCCCGGGAGCCCAGCTCAGTGGATGAGGCATTCAAGTTTATAAGGGAGGTTCTCAAGTGGGAAGAAGACAAGGATGATAACACGTATGACATAACTGGGGATGAATCATTTTACAGTACAGAACCAAGTTCCTCTCCTTATATTAGGCAAGAGTAG 2442 44.8 MASDVEGEKLWEEVLRKMLPVGAPLPDEEHLDYSIAVEYEGPPVPYRVPIVDPLDVDSLSIRSSSMVSVSASDLQSIPVAAPILPVVKVTNYSRFNRVRNGASLRELRSPVESGRSSSSVWRGQLGSRNSEVEDSDCGNGRGELFSSASSVQDPNSEREACIVCDARYCKNCLLKAMGSMPEGRKCVSCLGQPINESKRSSLGKYSRMLSKACSPLEVGQIMKAEKECLANQLRPEQLIVNGRQLRQEELAEVLGCSIPPQKLKPGRYWYDKDSGLWGKEGEKPDRIISSKLNIGGKLQLDASNGSTKVFINGREITKIELRVLKMANVQCPRDTHFWLYDDGSYEEEGQNNIKGNIWGKASTRFICSLFSLPVPPGIFQGPKEDPTAFSSRSVPEYLEQGRVQKLLLFGLEGSGTSTLFKQAKYLYGNKFTPQELQSIKLMIQSNMYKYLSLLLEGRERFEEEALMERKNNVSDAEGSDPGETGVDQSKPCIYSINQKFKHFSDWLLGIMAMGDLDAIFPAATREYAPLVDELWKDPAIQETYKRREELLFLPDVAKYFLDRAIEISSNEYEPSQKDILYAEGVTQSNGLAFMEFSFDDRSPMSETYNENLECPPPSSKYQLIRINSKGLHDGCKWLDMFEDVRAVIFCVALSDYDHMYTDSAGSLYNKMLASRDLFESLVRHPCFIDTRFVLLLNKYDAFEEKINRSPLAVCEWFWEFSPVRPHHNNQSLAHQAYYYVAMKFKDLYHSISSRKLFVWKTRAREPSSVDEAFKFIREVLKWEEDKDDNTYDITGDESFYSTEPSSSPYIRQE* 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 13182222 13232151 + Vvi17g922 Vvi17g922 779619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g922 813 ProSiteProfiles G-alpha domain profile. 402 791 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g922 813 CDD G-alpha 404 783 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g922 813 SMART galpha_1 383 790 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g922 813 SUPERFAMILY Transducin (alpha subunit), insertion domain 431 582 IPR011025 GO:0007165
Vvi17g922 813 MobiDBLite consensus disorder prediction 106 138 - -
Vvi17g922 813 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 18 808 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g922 813 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3-LIKE 18 808 - -
Vvi17g922 813 Pfam G-protein alpha subunit 402 779 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g922 813 MobiDBLite consensus disorder prediction 110 133 - -
Vvi17g922 813 PRINTS Alpha G protein (transducin) signature 405 420 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g922 813 PRINTS Alpha G protein (transducin) signature 572 594 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g922 813 PRINTS Alpha G protein (transducin) signature 644 672 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g922 813 PRINTS Alpha G protein (transducin) signature 692 701 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi17g922 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 783 IPR027417 -
Vvi17g922 813 MobiDBLite consensus disorder prediction 793 813 - -
Vvi17g922 813 Gene3D - 601 788 IPR027417 -
Vvi17g922 813 MobiDBLite consensus disorder prediction 794 813 - -
Vvi17g922 813 Gene3D - 433 583 IPR011025 GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g922 - - - vvi:100242391 1526.53
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g922 . Blo16g00262 . . . . . Bma12g01280 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0314 Lsi02g00010 . . Cme12g02053 . . . . Bpe07g01085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62