Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g923 ATGAGGAAAATAAAGTTGAAAAGGAACAATAAAGCAATTGCCCAACTCATTTCCAAAAGACCCGCGTCGACCCACGTTATAACCCTAACCCTACGCACTGTCTACTATATAAACGCAAAGATAAACCGCCGAGGCCCTTCCAGCGGCGACTGCGGGGAAGAGAAAAGGAGAGGAGCGAAGATGCAGATTTTCGTGAAGACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCATCTGACACGATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCGCCGGACCAGCAGCGCCTCATCTTCGCTGGCAAACAGCTGGAGGACGGCCGAACCCTAGCCGACTACAATATCCAGAAGGATGCCCTAATTCTGAGTGCGGTGCGGGTACCTTCATGGCCAATCATTTTGATAGGCACTATTGTGGCAAGTGCGGCCTCACCTATGTTTACCAGAAGGCTGGCGGAGATTAGGTATAAGATGGCCGCCTTTAGAAGATTCTTTTGTGTGGGGAAGCACATGGAGTTTCAATGGATCTAA 549 49.54 MRKIKLKRNNKAIAQLISKRPASTHVITLTLRTVYYINAKINRRGPSSGDCGEEKRRGAKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKDALILSAVRVPSWPIILIGTIVASAASPMFTRRLAEIRYKMAAFRRFFCVGKHMEFQWI* 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 13268007 13273528 + Vvi17g923 Vvi17g923 779620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g923 182 ProSitePatterns Ubiquitin domain signature. 87 112 IPR019954 -
Vvi17g923 182 SMART ubq_7 61 132 IPR000626 GO:0005515
Vvi17g923 182 ProSiteProfiles Ubiquitin domain profile. 61 136 IPR000626 GO:0005515
Vvi17g923 182 PANTHER UBIQUITIN 60 125 - -
Vvi17g923 182 PRINTS Ubiquitin signature 71 91 IPR019956 -
Vvi17g923 182 PRINTS Ubiquitin signature 92 112 IPR019956 -
Vvi17g923 182 PRINTS Ubiquitin signature 113 134 IPR019956 -
Vvi17g923 182 SUPERFAMILY Ubiquitin-like 59 132 IPR029071 -
Vvi17g923 182 Pfam Ubiquitin family 63 131 IPR000626 GO:0005515
Vvi17g923 182 Gene3D - 53 137 - -
Vvi17g923 182 PANTHER - 60 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g923 - - - pda:120110580 133.65
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g923 . . . . . . . . Cmo13g01210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000061 12 9 9 13 10 12 1 13 13 6 9 12 13 5 12 15 12 6 1 12 9 11 13 12 3 0 11 14 12 7 287