Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g93 ATGGCTAGTCACGGCGGTTCATCCAGGAAAAGTTTGACTTTGTCCATGCCATCGCAGGGAAAGAAAAAAGCTTCTGAGAATGGAGCTGGCCCCGATAGCGCTCGAAAATCTCTTGCCTCTGCTCGTTCCATGGGACTGACTGGAGAGCGTACAGTGAAGAGATTGCGACTGTCAAGGGCCCTGACAGTTCCTGACACCACAAGTATTTATGAAGCTTGCCGCCGTATGGCTGCTCGTAGAGTTGATGCCTTATTGTTAACTGATTCAAATGCGTTACTTTGTGGAATCCTTACAGACAAGGACATAGCAACAAGAGTCATTGCTCGTGAACTTAATCTTGAGGAAACACCAGTCTCCAAAGTTATGACAAGGAACCCAATTTTTGTTCTTTCTGATACTCTTGCTGTGGAAGCCCTGCAAAAGATGGTGCAAGGAAAGTTCAGACATTTGCCTGTTGTAGAGAATGGGGAGGTCATTGCTTTACTAGACATAGCAAAGTGTTTATATGATGCTATTGCTCGAATGGAGAGGGCAGCTGAAAAGGGAAAAGCCATTGCTGCTGCTGTTGAAGGAGTTGAAAAAAATTGGGGGACATCTCTCTCTGGTCCTAGCACATTCATTGAGACACTTCGAGAGAGGATGTTTAGGCCTGCTTTGTCCACGATCATCCCCGAGAATTCAAAGGTTGTAACAGTCTCACCAACTGACACAGTTCTAACAGCAGCAAAGAAGATGCTTGAACTTAAATTAAGTTGTGCAGTCGTAGCAGTTGAAAACAGACCAAAGGGGATTCTAACTTCAAAGGATATCCTGATGCGGGTCATAGCACAAAATCTTCATCCAGAATCCACTCCAGTGGAGAAGGTCATGACTCCAAATCCAGAATGTGCAACAATTGATACACCCATTGTTGATGCCCTACATACCATGCATGATGGGAAATTTTTACACCTTCCTGTCATTGATAGAGATGGTGGTGTAGTTGCTGTTGCTGATGTAATCCATATCACTCATGCAGCTGTGGCTACAGTGGGAGGCAATGCTGGAGTTAATAATGAGGCTGCAAGCAGTCTGATGCAGAAGTTCTGGGACTCAGCCATGGCATTAGGAACTGATGATGACGAAGAAACACGGAGTGAGGGTTCCTTGAAATTGGCTTCTGAAGGAACTGAAATAGGGAGAACTCTTCCTTATACTTCATCAGCCATGCATAACACCTTTGCTTTCAAAATTGAAGATAAAAGAGGACGGATGCATAGGTTTACCTGTGATACCCGGAGTTTGACAGATGTCATAACTTCAATCCTTCAGAGAGTGGGTGATGACATCGATCGCAACAACCTGCCGCAAATTCTGTATGAAGATGAAGACCATGACAAAGTAGTACTCGCATCAGATAATGATCTTGTGGCAGCCATGGAGCATGCTAGGTTAGCAGGTTGGAAGGGTTTAAGACTACATTTAGATTACTCGGGGACCCGCCCTCTTAGAAGGGACTCTGGAACTGGAGGTTTGGAGTATGCTCAGCGAGAAGCATGGGCTTCTGCATACAGTGCCGTTGCAGCAGGCGCCGCATTTGTAGCTGGGATGGGCTTATTAGCCTACCTGAAGAGATCCAGTAACTGA 1626 45.51 MASHGGSSRKSLTLSMPSQGKKKASENGAGPDSARKSLASARSMGLTGERTVKRLRLSRALTVPDTTSIYEACRRMAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPIFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKNWGTSLSGPSTFIETLRERMFRPALSTIIPENSKVVTVSPTDTVLTAAKKMLELKLSCAVVAVENRPKGILTSKDILMRVIAQNLHPESTPVEKVMTPNPECATIDTPIVDALHTMHDGKFLHLPVIDRDGGVVAVADVIHITHAAVATVGGNAGVNNEAASSLMQKFWDSAMALGTDDDEETRSEGSLKLASEGTEIGRTLPYTSSAMHNTFAFKIEDKRGRMHRFTCDTRSLTDVITSILQRVGDDIDRNNLPQILYEDEDHDKVVLASDNDLVAAMEHARLAGWKGLRLHLDYSGTRPLRRDSGTGGLEYAQREAWASAYSAVAAGAAFVAGMGLLAYLKRSSN* 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 851142 859908 - Vvi17g93 Vvi17g93 778790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g93 541 Gene3D - 403 488 - -
Vvi17g93 541 CDD PB1_MUG70 407 491 - -
Vvi17g93 541 ProSiteProfiles CBS domain profile. 290 349 IPR000644 -
Vvi17g93 541 SMART PB1_new 406 491 IPR000270 GO:0005515
Vvi17g93 541 ProSiteProfiles CBS domain profile. 222 282 IPR000644 -
Vvi17g93 541 Gene3D - 225 366 IPR046342 -
Vvi17g93 541 Pfam PB1 domain 407 489 IPR000270 GO:0005515
Vvi17g93 541 MobiDBLite consensus disorder prediction 1 45 - -
Vvi17g93 541 CDD CBS_pair_MUG70_1 57 173 - -
Vvi17g93 541 ProSiteProfiles CBS domain profile. 56 115 IPR000644 -
Vvi17g93 541 SMART cbs_1 228 275 IPR000644 -
Vvi17g93 541 SMART cbs_1 59 107 IPR000644 -
Vvi17g93 541 SMART cbs_1 293 338 IPR000644 -
Vvi17g93 541 SMART cbs_1 125 169 IPR000644 -
Vvi17g93 541 Pfam CBS domain 59 104 IPR000644 -
Vvi17g93 541 Pfam CBS domain 226 272 IPR000644 -
Vvi17g93 541 Pfam CBS domain 118 162 IPR000644 -
Vvi17g93 541 Pfam CBS domain 286 330 IPR000644 -
Vvi17g93 541 SUPERFAMILY CBS-domain pair 227 339 IPR046342 -
Vvi17g93 541 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 13 528 IPR034896 -
Vvi17g93 541 ProSiteProfiles CBS domain profile. 122 180 IPR000644 -
Vvi17g93 541 CDD CBS_pair_MUG70_2 226 342 - -
Vvi17g93 541 MobiDBLite consensus disorder prediction 1 22 - -
Vvi17g93 541 SUPERFAMILY CBS-domain pair 49 166 IPR046342 -
Vvi17g93 541 Gene3D - 33 187 IPR046342 -
Vvi17g93 541 ProSiteProfiles PB1 domain profile. 404 491 IPR000270 GO:0005515
Vvi17g93 541 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 13 528 - -
Vvi17g93 541 SUPERFAMILY CAD & PB1 domains 399 493 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g93 - - - vvi:100242422 983.786
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g93 . Blo16g00274 . . Bpe12g00476 . Bma06g00263 . . . Cma10g00055 Cma11g00028 . Car11g00028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01355 . Bpe15g00223 . . . Cmo10g00049 . . . . . . . . . . . . . . . . . . . . . . Csa01g00048 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001844 2 3 4 3 3 2 2 2 2 2 1 2 1 2 2 2 2 5 2 2 2 2 2 2 2 1 1 4 3 2 67