Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g931 ATGTTGTCCAAGACCAGCTCAAGGCATCAAATGGTCTCCCATATATCTTCTAAAAGATCAACAACAATGAAGACCACATCGTTGCTTTTCTCCTTGCTGCTCATTGCCCTTGCTGTGAAGCCTTTTTCTGTGGCTGCTGAATCTGCTCCTGACCCTGTGCTTGATACTGAGGGAAAGAAGCTCCGGTCCGGAGTTGATTACTACATCCTGCCAGTTTTCCGTGGGAGAGGCGGTGGCCTCACCCTGGCCAGCACTGGGAACGAGACCTGCCCTCTTGATGTTGTCCAAGAACAGCAAGAGGTATCAAACGGTCTCCCATTGACGTTTACGCCGGTGAACCCCAAAAAAGGCGTGATTCGTGTGTCCACCGATCATAACATCAAGTTCTCTGCTTCCACAATCTGTGTACAATCCACTTTGTGGAAGCTTGAGTATGATGAATCGTCCGGACAACGGTTTGTCACAACTGGTGGGGTGGAAGGCAATCCAGGTCGTGAAACTCTGGATAATTGGTTCAAGATTGAGAAATATGAAGATGACTACAAGCTGGTCTTCTGTCCAACAGTGTGTGATTTCTGCAAGCCTGTTTGTGGGGACATCGGCATTTATATCCAGAATGAATACAGGCGTTTGGCTCTGAGTGATGTGCCCTTCAAGGTTATGTTCAAGAAGGCTTGA 678 47.94 MLSKTSSRHQMVSHISSKRSTTMKTTSLLFSLLLIALAVKPFSVAAESAPDPVLDTEGKKLRSGVDYYILPVFRGRGGGLTLASTGNETCPLDVVQEQQEVSNGLPLTFTPVNPKKGVIRVSTDHNIKFSASTICVQSTLWKLEYDESSGQRFVTTGGVEGNPGRETLDNWFKIEKYEDDYKLVFCPTVCDFCKPVCGDIGIYIQNEYRRLALSDVPFKVMFKKA* 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 13575608 13588502 + Vvi17g931 Vvi17g931 779628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g931 225 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 52 81 IPR002160 GO:0004866
Vvi17g931 225 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 90 110 IPR002160 GO:0004866
Vvi17g931 225 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 171 190 IPR002160 GO:0004866
Vvi17g931 225 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 194 223 IPR002160 GO:0004866
Vvi17g931 225 ProSitePatterns Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature. 53 69 IPR002160 GO:0004866
Vvi17g931 225 PANTHER KUNITZ TRYPSIN INHIBITOR 2 30 225 IPR002160 GO:0004866
Vvi17g931 225 CDD STI 52 224 IPR002160 GO:0004866
Vvi17g931 225 PANTHER KUNITZ TRYPSIN INHIBITOR 2 30 225 - -
Vvi17g931 225 SUPERFAMILY STI-like 49 225 IPR011065 -
Vvi17g931 225 Gene3D - 47 225 - -
Vvi17g931 225 Pfam Trypsin and protease inhibitor 53 224 IPR002160 GO:0004866
Vvi17g931 225 SMART kul_2 52 225 IPR002160 GO:0004866
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g931 - - - vvi:100255885 401.749
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g931 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00280 . . . . . . . . . . . Sed08g2588 . . . . . . . . Bhi08g01360 Tan05g2129 Cmetu12g1923 Lac10g0333 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002445 5 4 0 5 2 1 1 1 1 1 1 1 1 3 3 0 1 2 1 1 1 2 1 3 8 2 1 1 1 6 61