Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g943 ATGGAGAAGACAGAAGAAGAAGAAGAACAAAAAAGCTCCTCTCTGTTTCCTCTCCAAGCCGCTTCAGCTGCCTCACTCGCAAGCAGCTCAAACGTCCCTCAATGGCTCTGCAACACCAGCTTCAACACCGACCTGTCCGTCGTAAACGACGCCGTTTCATCCCTCTACAACCTCACCGCCGCCCAATCCGAAGACGATGAGCCACGACAACAGCAAGCGACGCCCAAGCCTTCTTCCTACGACTTGCTGCAATCTTCAGAATCCGATGATGGAGGTCGCGACTCCAAGAGGGAAGCGAAGAAACATAAGAAGCGGAAGAGGAGGAGGTACAGTGAAGAAGAAGCTTCTGCCGCCAACGATTATGCCTCGAGGAAATCTGGCGTTGGAGCTTGGGCAACTCGGGGTTCGAAGCCTTCTGTCAAAGATTATTACTTCGATTCTAGAGGTGATCGTGATAATTTGGCCTTCGGATGTCTCTACAGAATGGATGTTGCACGGTACAAGCTTGGCAATTCTGCAAAACTCTTTCAGCCTGGTTTTCAAGCTTTGTACTGGTGGAATAAAATGGGTTCAATCTTGGATAGAGACGGTGATCTTGATGTGTTAGACAGTAAACTTAAAACCGGTGGGCGGTACTGGTCTGCAAAGCACTCTGTTCTAGAGCGCCATAAGAACCTCAAGCGCATTCGAATTGTTGCACATGAAAAGTCCAAGATAGTGATTCCCGGTGACTTCATTCCTTTATCTGAAATTCAAACATCTCCTGTAGATGTTATTGATGGATCATCTCTAGGAACTTCAACAAGTGAAGAATCGTGGGAAGATGAGGTATTACGCAAAACACGTGAGTTCAACAAGATGTCGAGGGAGCATCCACATGATGAAAAAATTTGGTTATCTTTCGCAGACTTTCAAGATAGGATTGCAAGTATGCAACCACAAAAAGGTGCTCGTTTGCAGACTCTAGAGAAGAAAATTAGTATACTGGAGAAGGCAACTGAGCTTAACCCGGAAAACGAAGAATTGCTGCTTTGTCTTATGAAGGCTTATCAGAGCAGAGACAGCACTGATGTCTTTATAGGTAGATGGGAAAAGATACTCTTGCAACATTCTGGGAGTTACATGTTGTGGAAAGAGTTTCTGCATGTTGTTCAAGGGGAATTCTCCAGATTCAAGGTTTCTGACATGAGAAAATTGTATGTACATGCAATCCAAGCTCTCTCTGCCGCATGCAGCAAGCAGTATAGGCAGGTTCACCAAACTGCTAAAAGTCCTACCTCGGATCCTGCTGTTATTGAGCTAGAACTTGGTTTGGTAGACATATTTCTGAGCCTTTGCCGGTTTGAGTGGCAGGCTGGCTATCAGGAGTTGGCTACTGCTCTATTTCAAGCTGAAATTGAATATGGTTTGTTATGTCCTTGTCTATTTCTTTCTGAGCAGAGTAAACAAAGATTATTTGAGCATTTTTGGAATGGTGATGGTGCAAGAGTTGGAGAAGAAGGGGCCCTGGGTTGGTCCACATGGTTGGAAAAGGAGGAGGAAAACAGACAACAGGTTATGAAAGAGGAGACTGCGGATGAAAACGACAAAGGTGGGTGGACAGGTTGGTCAGAACCATTGTCAAAACAGAAGGAAATAAATCTGGAAAAAACCAGTATAAATCTGGAAAATGTAGCTGACAATGATGTGGATGTGGATGTGGAGGATCTTGAAGACAAATTAGAGACCAAAGACACAGAGCAGGAAGAAGACACAGAAGCTTTGATGAAAATGCTGGGCATTGATGTCAATGCTGAAGCCAATAATGAGGTTAAAGACACTTCAATCTGGACTAGATGGTCAGAAGAAGAGTCATCAAGGGACTGCAATCAGTGGATGCCTTTCCATACCAAATCTGTTGGGCCTTCTCATATGGATGAATCTCCTGATAAACAATTGGATGAGCAACTTTTGGGAGTCATATTATTTGAAGATGTCAGTGAATACCTGTTCTCTTTAAGCTCAGGAGAGGCTCGCATATCTCTTCTATTCCACTTCATTGATTTTTTTGGTGGAAAGATACCTGAATGGATGTGCACAAACAACTCAAGTTGGACTGAGAAAATCCTGAGCCTGGAGGCAGTGCCAGATTTCCTCTCAGAAAAATTGAGAAGGGTTAATGATGTTTTAACCAAAACTCAAACCAGCTCGTGTGGGTTCAGTTTGGAAGTTCTGCTGGGCAATGCACATGATGCTTCTAGGAGGATTGATATGATGAAATTTCTTCGCAATGCTATCTTACTTTGTTTAACTGCTTTTCCACGTAACCACATTTTGGAGGAAGCTGTTCTTGTTGCTGAAGATATGTTTCTTACAAAAATGAATTCTTGTAGCTGTTCAGTTACCCCATGCCGAGGTTTAGCAAAGGGCCTCTTAAAAAATGATCGACAGGATCTGTTGCTATGTGGAGTTTATGCACGAAGAGAGGCCATTTTTGGGAATATTGATCATGCAAGAAGGGTGTTTGACATGGCATTATCATCTATTGAGAGCCTTCCAGCGGATCTTCAGTTGAATGCACCTCTTATATATTTCTGGTATGCTGAGACAGAGCTTTCCAACAGTTCTGGCAACAGCTCAGAGTCATTGAAGCGGGCAATACACATCCTATCCTGTTTGGGAAGTGGTGTTTCATATAATCCATTTAAATGTCAGCCATCAAGTCCGCAACTCCTTAGAGCCCACCAAGGGTTCAAAGAACGAATCAGGATGCTGCGAACAACATGGGCACGTGGCATTATAAATGATAGTTCTACTGCTCTCATTTGTTCAGCTGCTTTGTTTGAAGAGTTGACTACTGGATGGGTTGCTGCCGTTGAAGTTTTAGATCATGCTTTTTCCATGGTTCTTCCAGAGAAAAGAAGCCAAAGTCATCAACTTGAATTTCTGTTCAACTATTATCTTCGGATCCTTCAGAAACACCATAAGCAAACAAGACTATCAAAATTCTTGGAGTCCATCTCGTTGGGTTTGCAAATATACCCTTCCAGCCCAGAACTTTTTACTGCTTTAGTGGAGATTAGCCATCTATATACTGTCCCCACTAAACTAAGGTCAATATTGGATGACTTTTCTAACAAAAAACCATCTGTGATGGTTTGGCTCTTTGCAGTGTCATATGAATTGATCAGAGGTGGCTCCCAGCATAGAATTCATGGATTGTTTGAAAGAGCATTGTCAAATGATAGGTTGCGCCACTCAGTACTACTCTGGCGTTGCTACATTGCATACGAGATTGATATAGCAAGCAATCCTTCTGCAGCTCGACGAGTTTTTTTCCGTGCTATCCATGCCTGTCCATGGTCCAAGAAGCTATGGCTTGATGGATTTCTGAAGCTGAAGAGCGTTTTAAGTGCAAAAGAGATGTCAGATCTGCAGGAAGTAATGAGGGATAAGGAATTGAATGTGAGGACGGACATCTATGAGATTCTTCTGCAAGATGATGTGGGACCCTGA 3495 43.23 MEKTEEEEEQKSSSLFPLQAASAASLASSSNVPQWLCNTSFNTDLSVVNDAVSSLYNLTAAQSEDDEPRQQQATPKPSSYDLLQSSESDDGGRDSKREAKKHKKRKRRRYSEEEASAANDYASRKSGVGAWATRGSKPSVKDYYFDSRGDRDNLAFGCLYRMDVARYKLGNSAKLFQPGFQALYWWNKMGSILDRDGDLDVLDSKLKTGGRYWSAKHSVLERHKNLKRIRIVAHEKSKIVIPGDFIPLSEIQTSPVDVIDGSSLGTSTSEESWEDEVLRKTREFNKMSREHPHDEKIWLSFADFQDRIASMQPQKGARLQTLEKKISILEKATELNPENEELLLCLMKAYQSRDSTDVFIGRWEKILLQHSGSYMLWKEFLHVVQGEFSRFKVSDMRKLYVHAIQALSAACSKQYRQVHQTAKSPTSDPAVIELELGLVDIFLSLCRFEWQAGYQELATALFQAEIEYGLLCPCLFLSEQSKQRLFEHFWNGDGARVGEEGALGWSTWLEKEEENRQQVMKEETADENDKGGWTGWSEPLSKQKEINLEKTSINLENVADNDVDVDVEDLEDKLETKDTEQEEDTEALMKMLGIDVNAEANNEVKDTSIWTRWSEEESSRDCNQWMPFHTKSVGPSHMDESPDKQLDEQLLGVILFEDVSEYLFSLSSGEARISLLFHFIDFFGGKIPEWMCTNNSSWTEKILSLEAVPDFLSEKLRRVNDVLTKTQTSSCGFSLEVLLGNAHDASRRIDMMKFLRNAILLCLTAFPRNHILEEAVLVAEDMFLTKMNSCSCSVTPCRGLAKGLLKNDRQDLLLCGVYARREAIFGNIDHARRVFDMALSSIESLPADLQLNAPLIYFWYAETELSNSSGNSSESLKRAIHILSCLGSGVSYNPFKCQPSSPQLLRAHQGFKERIRMLRTTWARGIINDSSTALICSAALFEELTTGWVAAVEVLDHAFSMVLPEKRSQSHQLEFLFNYYLRILQKHHKQTRLSKFLESISLGLQIYPSSPELFTALVEISHLYTVPTKLRSILDDFSNKKPSVMVWLFAVSYELIRGGSQHRIHGLFERALSNDRLRHSVLLWRCYIAYEIDIASNPSAARRVFFRAIHACPWSKKLWLDGFLKLKSVLSAKEMSDLQEVMRDKELNVRTDIYEILLQDDVGP* 1165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 13895317 13953615 - Vvi17g943 Vvi17g943 779640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g943 1164 SMART hat_new_1 275 307 IPR003107 GO:0006396
Vvi17g943 1164 SMART hat_new_1 320 352 IPR003107 GO:0006396
Vvi17g943 1164 SMART hat_new_1 1059 1093 IPR003107 GO:0006396
Vvi17g943 1164 SMART hat_new_1 826 866 IPR003107 GO:0006396
Vvi17g943 1164 SMART hat_new_1 1096 1129 IPR003107 GO:0006396
Vvi17g943 1164 SUPERFAMILY TPR-like 1006 1121 IPR011990 GO:0005515
Vvi17g943 1164 MobiDBLite consensus disorder prediction 60 86 - -
Vvi17g943 1164 Gene3D Tetratricopeptide repeat domain 271 515 IPR011990 GO:0005515
Vvi17g943 1164 Gene3D Tetratricopeptide repeat domain 974 1138 IPR011990 GO:0005515
Vvi17g943 1164 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL 14 1155 IPR013633 -
Vvi17g943 1164 MobiDBLite consensus disorder prediction 60 119 - -
Vvi17g943 1164 Coils Coil 567 587 - -
Vvi17g943 1164 MobiDBLite consensus disorder prediction 13 29 - -
Vvi17g943 1164 Pfam NRDE-2, necessary for RNA interference 280 685 IPR013633 -
Vvi17g943 1164 Coils Coil 509 529 - -
Vvi17g943 1164 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g943 K26109 NRDE2; nuclear exosome regulator NRDE2 - vvi:100255247 2211.42
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g943 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010555 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32