Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g954 ATGAAACTCAACCTCACCACTGGCATCATCCCTTCCCTCAACGTCTCTGCGGGGCTCTTGGGTTTCTTCTTCGTCTCGGTTTGGACAAAGTTTCTTGACAAGTCTGGGCTCTTGAAGCAGCCCTTCACTCGACAAGAGAACACTGTTATTCAGACTTGCGTCGTGGCCTCCTCTGGCATCGCCTTCAGCGGAGGTTTTGGAAGCTACCTTTTCGGAATGAGTCAAGCTATTGCTAAACAATCTGAAAATGCTGGAGGCAACGAGGAATATAAGAACCCAGCAGTAGCATGGATGATTGGCTTTCTCTTTGTTGTTAGCTTTCTTGGCCTCTTTTCTGTCGTGCCTCTTCGAAAGATCATGATTGTAGACTTCAAATTGACATACCCAAGTGGTACTGCCACTGCTCATCTCATCAACAGTTTCCACACTCCTCAAGGAGCCAAGTTGGCAAAGAAACAAGTTAGAGTATTGGGCAAGTACTTCTCCTTCAGCTTCTTGTGGGGTTTCTTCCAATGGTTTTTTGCTGCTGGAGACGATTGCGGATTTGCAGGCTTCCCTACGTTTGGACTTAAAGCATACAAATACAAGTTTTTCTTTGATTTCTCGGCAACTTATGTTGGAGTGGGGATGATTTGTCCGCATATAGTAAACATATCGCTGCTGGTTGGAGGAATTCTTTCTTGGGGACTTATGTGGCCGCTTATAGAAACTAGAAAGGGTGATTGGTACCCTGCAGACCTTCCCTCAAGCAACATTCGTGGTCTTCAAGGTTACAAGATATTCATCGCCATTGCAACAATCCTAGGTGACGGGCTATATAACTTTTTCAAGGTACTGGGTCAAACTCTCTTGGGATTGTTTTACCAACTCCAATACAAAAATATGAGCGGTGTCCCACCCATTGAGGATCGCTCCTCTCCTAGGAGCTCATCTACTTGTTACAATGATACTCCTGCAATCTCCATGGCTACACTTCCTCACATATTTCCCCAACTCAAATGGTACTACATACTGCATTGGAGCATGGGCTGGAGCTGCACATGGTGGAGTTATAGCAGGCCTGGCAGCCTGTGGAGTTATGATGAACATTGCATCAACCGCTTCCGACCTAATGCAGGATTTCAAGACTGTGGAAGTGAATACCCTGCTCCTTATGCTCTGGTCTTCCGCAACATGGCTGTTCTTGGGGTAGAGGGCATCTCCAATTTACCAAAGAACTGTTTCACGCTTTGTTGTGTGTTTTTTGGTGCAGCAATTCTCGTGAATTTGGTTAGGGATACTGTAGGTCGAAAGAGGGCGCAGTTCATTCCAATCCCAATGGCAATGGCAATACCATTTTATCTGGGCCCTTACTTCGCCATTGATATGTGTGTTGGTAGCTTAATATTATTTATATGGCAAAGGATAAACAAAGCTAAGGCAGAAGCTTTTGGACCTGCAGTAGCTTCTGGCTTGATTTGTGGAGACGGACTATGGACTTTGCCTAGTTCAATTCTTGCTTTAGCAGGAATAAAGCAACCAATTTGCATGAAGTTCCTGTCTAGGGCAACAAATGCCAGGGTTGATAAGTTCCTAGGGGCTTAA 1584 45.2 MKLNLTTGIIPSLNVSAGLLGFFFVSVWTKFLDKSGLLKQPFTRQENTVIQTCVVASSGIAFSGGFGSYLFGMSQAIAKQSENAGGNEEYKNPAVAWMIGFLFVVSFLGLFSVVPLRKIMIVDFKLTYPSGTATAHLINSFHTPQGAKLAKKQVRVLGKYFSFSFLWGFFQWFFAAGDDCGFAGFPTFGLKAYKYKFFFDFSATYVGVGMICPHIVNISLLVGGILSWGLMWPLIETRKGDWYPADLPSSNIRGLQGYKIFIAIATILGDGLYNFFKVLGQTLLGLFYQLQYKNMSGVPPIEDRSSPRSSSTCYNDTPAISMATLPHIFPQLKWYYILHWSMGWSCTWWSYSRPGSLWSYDEHCINRFRPNAGFQDCGSEYPAPYALVFRNMAVLGVEGISNLPKNCFTLCCVFFGAAILVNLVRDTVGRKRAQFIPIPMAMAIPFYLGPYFAIDMCVGSLILFIWQRINKAKAEAFGPAVASGLICGDGLWTLPSSILALAGIKQPICMKFLSRATNARVDKFLGA* 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 14425929 14430764 + Vvi17g954 Vvi17g954 779651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g954 527 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL8-RELATED 1 317 - -
Vvi17g954 527 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL8-RELATED 376 526 - -
Vvi17g954 527 Pfam OPT oligopeptide transporter protein 376 499 IPR004813 GO:0035673
Vvi17g954 527 Pfam OPT oligopeptide transporter protein 1 290 IPR004813 GO:0035673
Vvi17g954 527 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 1 317 IPR045035 GO:0035673
Vvi17g954 527 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 376 526 IPR045035 GO:0035673
Vvi17g954 527 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 1 290 IPR004813 GO:0035673
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g954 - - - vvi:100256406 647.121
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g954 . . . . . . . . . Cmo18g00078 . . . . . Cpe20g00180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed08g2805 . . Cma13g00959 Cma18g00101 Car13g00795 Car18g00091 . . Bhi08g01350 Tan05g2138 Cmetu04g2126 Lac10g0326 Hepe07g2321 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015540 0 1 0 0 0 1 0 1 1 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 3 11