Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g959 ATGTTCAACACCATCATCATGGCCTCCTCCAGAACTCTCGACTCCGTCACTTTCTACGTCTGCATGTTGCATGCAGGCCACTTTCCTGATAATTTCACTTTCCCTTTCCTCATCAAATCTTCTTCCGCCTCACCCACGAGCCTCCTTGGTCACCAACTCCACGCCCATGTCGTGAAGTTCGGGCTAGACCGCGACGTCTTCGTTGTGAACAACATGATCGCCTTGTATTCAAGTTTTCGAGAACTGCGATCTGCTCGGAAGGTGTTTGATGAAAGTTATAGCTTGGTTGATGTTGTTTCGTGGACTACATTGATCACTGGGTTCTCTAATTCGGGCCAGATTGATGAGGCCCGGAAAATTTTTGATCTAATGCCGCTGAAGAATACTGTTTCATGGAATGCAATGATCTCAGGGTATGCTGGGTCCAGTAGAATCAACGAAGCGCGAAAGCTGTTTGATGAAATGCCTGACCGAGACGCAGCATCATGGAGCGCAATGGTTTCGGGGTATTCGCAATTGGGGATGTGCAATGAGGCCTTGGATCTGTTCATGGAGATGGTGACTGGGGATAAGATGATTCCGAATGAAGCAGCATTGGTCAGTGCAGTTTCCGCATGCGCTCAACTGAGGGCGTTGGAGGAAGGGCGGTGGCTGCATAGCTACATCAAAGAGAAGAAGCTGAGGATTAATGTGACATTAGCAGGGTTGGCCTTAAATGGATGTGGGAAGGAAGCATTGGCGTTGTTTTGGAAAATGCAGTTTGTGGGTCCTTCTCCTAACGCCATAACCTTCATTGCGTTGCTGACCGGGTGCAGCCACTCAGGGTTAATCACGGAGGGTCGATGGCTTTTCAGCATGATGACTCAAGTTTATGGCATAAAACCTCAGCTGAAGCACTACGGTTGCATGGTTGATCTGCTCGGCCGTGCGGGACTCGTTAAGGAAGCGCTAGATTTTGTGGAGAAAATGCCAATGAAGCCCCATTCTGAGTTATGGGGCGCCCTTGTTGGGGCGTGTAGAATTCATGGCCAAGTTGAGCTAGGTGAAGAGCTTGGCAAACGTCTCATTGATTTGGAGCCACACCATGGTGGGAGGTATGCTCTTTTGTGTAATATATTTGCAGCTGCTCAGAGATGGGATGATGTTGCCATGGTGAGAGATTTGGAGAAAGGCAGAAAGGTTTTAAAGAATCCAGGAAATAGTATAGTGGAAACATAG 1218 48.28 MFNTIIMASSRTLDSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQLHAHVVKFGLDRDVFVVNNMIALYSSFRELRSARKVFDESYSLVDVVSWTTLITGFSNSGQIDEARKIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLFMEMVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRINVTLAGLALNGCGKEALALFWKMQFVGPSPNAITFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVEKMPMKPHSELWGALVGACRIHGQVELGEELGKRLIDLEPHHGGRYALLCNIFAAAQRWDDVAMVRDLEKGRKVLKNPGNSIVET* 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 14575745 14577071 + Vvi17g959 Vvi17g959 779656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g959 405 Pfam PPR repeat 262 288 IPR002885 -
Vvi17g959 405 Pfam PPR repeat 233 253 IPR002885 -
Vvi17g959 405 Pfam PPR repeat 300 324 IPR002885 -
Vvi17g959 405 Pfam PPR repeat 99 125 IPR002885 -
Vvi17g959 405 Pfam PPR repeat 162 187 IPR002885 -
Vvi17g959 405 Pfam PPR repeat 69 91 IPR002885 -
Vvi17g959 405 Pfam E motif 342 404 IPR046848 -
Vvi17g959 405 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 127 IPR002885 -
Vvi17g959 405 Gene3D Tetratricopeptide repeat domain 127 212 IPR011990 GO:0005515
Vvi17g959 405 Pfam PPR repeat family 127 158 IPR002885 -
Vvi17g959 405 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 230 404 - -
Vvi17g959 405 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 234 - -
Vvi17g959 405 PANTHER OS02G0625100 PROTEIN 6 234 - -
Vvi17g959 405 PANTHER OS02G0625100 PROTEIN 230 404 - -
Vvi17g959 405 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Vvi17g959 405 Gene3D Tetratricopeptide repeat domain 9 126 IPR011990 GO:0005515
Vvi17g959 405 Gene3D Tetratricopeptide repeat domain 213 404 IPR011990 GO:0005515
Vvi17g959 405 TIGRFAM PPR: pentatricopeptide repeat domain 162 188 IPR002885 -
Vvi17g959 405 TIGRFAM PPR: pentatricopeptide repeat domain 99 124 IPR002885 -
Vvi17g959 405 TIGRFAM PPR: pentatricopeptide repeat domain 130 158 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g959 - - - vvi:100246088 798.89
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g959 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071006 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1