Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g96 ATGGAGAGAGGAAGAGGAGGTGGTGTCGCTCTTCTCAGTGAAGATCTTCTTCAGAACATTCTCTCCAGACTCCCAGCCTTATCCTTTGCAAACGCGGGGTGCGTTAGCCGCTCCTGGCGCCGCGCCGCCGGTGACGTTCTCTCTCGCCCTAAGCTCGCCTCTGCAATCTCTCTCAATCCTTCTTTTCAGGATGCTGTAAAGGAGGTTCTGGATTCAGTTCTTTCCAGGCCTATTCGTCCTCATTTCGCTATTGCTTGCATTGGCCTCAAGTTCAGCCTGGAACGCACTCACAAACTCATTACGAAGAAATTGGGCTCTGCTACTCCGGTGATTACTTCTGTTGCTCGTGGAATCATTGGTAGTGATGCGATTACTGAGGAATTCAAGGAGGTGAAGTGGGGAGTTGACGTTGAAGATTTTAATTTACCAGCAAATAAAGATCGAGGCATTGTTTTGATTGTTGGTTTTATGCCGGGATTGAAAGTTGATGCAATCCCTCTGTTGCGAGAATTGGAGGAACCTGGCATTTCCCTTATCGACAAGTTTGTGATGGATATTAGGAATTTTTCTGCTGCTGTTTCGGGTTGCACTTCTCCGACTGGAATTGTAATGTTTGGGGATAAACACGCTGACATGAAACCCGTTCTCGAGAAGATGGATTATGCCATGTCTATGGAAACTGTCATTTTGGGTGAAGAGAGTGGACATTTTATGTATAGAAGTGGGGATGATTCTAGAAACATCAGTGGGAGTCTAAAAAACTCTTGTGATGGTGTTGCTCTTGTATTTGCTAGGGACAATGATAAGCCTCAAGGTGTAGGTGAAACTCAATTCCATGTTGCTTTGTCAACTGGTGTAGTACCTGTTGGTCCCACACACAAGGCGGCTTCCGTTAAAGTGAAAGGCGATGGATCTGAGCGTTCTACATGGCTCACTGCAAGAAAAGAAGGCCTCAAAGAGGCCCTTGATGGTGAAAGACTTCTACATGATATTTATGATGAGATGGAAAATGAGAATGCTTCTCATGACTTGTACATTGGGGTTACGAAAAGAAGAAAGTGTTCCATTGGGTCTGAGAAGGTGAGGTGGGTAACAACCTTGGAATTCCATGACGTTTTAGGAGGAGATGAAGAGTACCTCTTTGTTGACGGCGTTGGCATCAAAACTGGTGATCCCTTTCGTTTCTACCGTTCCGATTCTGATACTGCTTTGTCTTCTTGTCGCCATGTCTCTGAAGAGTTCAGAAATCTAAAGCAAGCCTGGACCCACAAAAACAGCTATCATTTTAGGGGTGTTGCTGATGGTGGCGACAAGACAGAAGTGTGTGGAGGTATCATCTTCTCCTGCTATGGCCGCGGTGACTCATTCTTCGGACAAGCAAATGTTGATAGCTCCCCCTTCTTGGAGAACTTTCCTGGGTTTCCCTTAGCAGGGATAATGTGCGGCGGGGAAATTGGGCGTGTCCATTTGAGCTCTGCAGATCATCAAGGTGGTCAGGAAGAAAGCTCCCCCCGCAGCTATCTACACTATTACAGCACTGTTTACCTGGTGATATCCCATACTCCATCGTCTCTGGAGAGTTAG 1584 46.4 MERGRGGGVALLSEDLLQNILSRLPALSFANAGCVSRSWRRAAGDVLSRPKLASAISLNPSFQDAVKEVLDSVLSRPIRPHFAIACIGLKFSLERTHKLITKKLGSATPVITSVARGIIGSDAITEEFKEVKWGVDVEDFNLPANKDRGIVLIVGFMPGLKVDAIPLLRELEEPGISLIDKFVMDIRNFSAAVSGCTSPTGIVMFGDKHADMKPVLEKMDYAMSMETVILGEESGHFMYRSGDDSRNISGSLKNSCDGVALVFARDNDKPQGVGETQFHVALSTGVVPVGPTHKAASVKVKGDGSERSTWLTARKEGLKEALDGERLLHDIYDEMENENASHDLYIGVTKRRKCSIGSEKVRWVTTLEFHDVLGGDEEYLFVDGVGIKTGDPFRFYRSDSDTALSSCRHVSEEFRNLKQAWTHKNSYHFRGVADGGDKTEVCGGIIFSCYGRGDSFFGQANVDSSPFLENFPGFPLAGIMCGGEIGRVHLSSADHQGGQEESSPRSYLHYYSTVYLVISHTPSSLES* 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 895126 901496 - Vvi17g96 Vvi17g96 778793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g96 527 PANTHER F-BOX ONLY PROTEIN 22 8 525 - -
Vvi17g96 527 SUPERFAMILY F-box domain 9 45 IPR036047 GO:0005515
Vvi17g96 527 SMART FIST_C_2 321 488 IPR019494 -
Vvi17g96 527 Pfam F-box domain 12 44 IPR001810 GO:0005515
Vvi17g96 527 PANTHER SKP2-LIKE, FIST C DOMAIN, FIST DOMAIN, N-TERMINAL ISOFORM 1 8 525 - -
Vvi17g96 527 Pfam FIST C domain 333 487 IPR019494 -
Vvi17g96 527 SMART fbox_2 12 52 IPR001810 GO:0005515
Vvi17g96 527 Gene3D - 11 47 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g96 - - - vvi:100262924 1060.83
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g96 . . . . . . . . Cmo13g00844 Cmo18g00225 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma13g00814 Cma18g00311 . Car18g00236 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014082 0 0 0 0 0 0 2 1 1 0 1 1 2 0 0 2 1 3 2 1 0 1 0 1 1 0 1 1 1 1 24