Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g960 ATGGCTCGCCGAGCCGCCGCCCAGCAGCTGATCGACTCGATCGCGTCGAAGCTCAGCTCCGCCACCGCTTCTTCGGCTCAGACTCGGGGTTTTGCGGCGGCTGCGCATCCTCCGCCGGCGGTGTTCGTGGACAAGAACACTAGGGTGATTTGCCAAGGCATCACAGGCAAGAACGGCACGTTCCACACTGAGCAAGCCATCGAATATGGCACCAAAATGGTAGGTGGTGTAACACCAAAGAAGGGTGGGACAGAACACTTGGGACTTCCTGTTTTCAACACTGTTGCAGAGGCAAAGGCTGAAACAAAGGCTAATACATCTGTAATTTACGTGCCCCCACCTTTTGCTGCTGCAGCTATTATGGAGGCAATGGAAGCTGAGTTGGATCTTGTTGTATGCATCACAGAGGGCATCCCTCAGCATGACATGGTAAAGGTGAAGGCTGCTCTGAACAGGCAAACAAAAACTCGGCTGATTGGGCCAAACTGTCCTGGAATTATCAAGCCTGGAGAATGTAAAATTGGGATCATGCCTGGGTACATTCACAAACCAGGCCGTGTAGGAATTGTTTCCCGATCTGGTACCTTGACATATGAAGCGGTTTTCCAAACAACCGCAGTCGGCCTTGGACAGTCCACCAGTGTAGGCATAGGGGGGGATCCTTTTAATGGGACAAACTTCGTTGATTGCATTAAGAAGTTCCTAGTTGATCCTCAGACAGAAGGTATTGTTCTTATAGGAGAGATTGGTGGTACTGCTGAAGAGGATGCTGCTCAGTTAATAAAGGAAAGCAAGACTGAGAAGCCTATTGTTGCATTTATTGCTGGCCTAACTGCTCCCCCTGGTCGTCGTATGGGTCATGCTGGAGCCATTGTATCAGGTGGGAAGGGCACAGCCCAAGACAAAATCAAGACCCTCAGGGAAGCTGGTGTTACAGTGGTAGAATCTCCTGCAAAAATGGGTGTTGCCATGCTTGAAGCCTTCAAGCAAAAGGGTCTCATTCCGGCCTAA 1011 50.54 MARRAAAQQLIDSIASKLSSATASSAQTRGFAAAAHPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANTSVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNRQTKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTSVGIGGDPFNGTNFVDCIKKFLVDPQTEGIVLIGEIGGTAEEDAAQLIKESKTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKMGVAMLEAFKQKGLIPA* 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 14593392 14610766 + Vvi17g960 Vvi17g960 779657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g960 336 Gene3D - 40 159 - -
Vvi17g960 336 SMART CoA_binding_2 42 138 IPR003781 -
Vvi17g960 336 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 6 334 - -
Vvi17g960 336 Pfam CoA binding domain 44 137 IPR003781 -
Vvi17g960 336 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 42 325 IPR005810 GO:0003824
Vvi17g960 336 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 191 220 IPR033847 -
Vvi17g960 336 Pfam CoA-ligase 190 311 IPR005811 GO:0003824
Vvi17g960 336 Gene3D - 160 333 IPR016102 -
Vvi17g960 336 SUPERFAMILY Succinyl-CoA synthetase domains 162 329 IPR016102 -
Vvi17g960 336 PRINTS Succinyl-CoA synthase signature 120 137 - -
Vvi17g960 336 PRINTS Succinyl-CoA synthase signature 216 234 - -
Vvi17g960 336 PRINTS Succinyl-CoA synthase signature 247 260 - -
Vvi17g960 336 PRINTS Succinyl-CoA synthase signature 280 297 - -
Vvi17g960 336 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 276 289 IPR017440 -
Vvi17g960 336 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 6 334 - -
Vvi17g960 336 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 39 328 IPR005810 GO:0003824
Vvi17g960 336 PIRSF SucCS_alpha 38 331 IPR005810 GO:0003824
Vvi17g960 336 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 40 161 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g960 K01899 LSC1; succinyl-CoA synthetase alpha subunit [EC:6.2.1.4 6.2.1.5] - vvi:100261494 627.861
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g960 . . . . Bpe12g00634 . . . Cmo13g00995 Cmo18g00076 . . . . . Cpe20g00178 . . . . . . . . . . . . . . . . . . . Lsi02g00271 Csa01g00750 Chy12g01362 Cme12g01794 Blo13g00104 . . . . . . Bma08g00126 Sed08g2797 . . Cma13g00961 Cma18g00099 Car13g00797 Car18g00089 Cpe09g01091 . Bhi08g01346 Tan05g2142 Cmetu12g0797 . Hepe07g2322 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011285 1 2 1 1 1 0 2 0 0 1 0 0 1 1 1 2 0 1 2 0 1 1 0 1 1 1 1 2 1 2 28