Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g963 ATGAGTGGCGGTGGTGGTGGAAGGTGTGCTGCTACAAATTCAAATTCACATGTAAATGGTGTGAATTACATTCTACATACAGTATCCAAGATGGATACTCTTGCTGGTGTGGCCATCAAGTATGGTGTTGAGGTGGCTGATATCAAGAGGATGAATGGTTTGGCCACAGATCTTCAAATGTTTGCTTTGAAGTCATTGCAGATACCCTTGCCAGGCAGACATCCTCCGTCCCCGGTGTTGTCCAATGCTTCTACATCTTCAGGAGAAAGGAGCACCGAAGAAACACCACTGCATCTGAGCCACTCCAATGTCTTGGAATCACTCCAGTCCTTAGGGTTGAAAACACCCCAAAAGAAAGTTTCTCCAGCCATGAGTACTTTACAGAACTATTATGGTCTCAAATCTCAAGACAAAAATCAAAATGGTGGGGCTGAGGGCATGGAAATGACGCCATCTTCAAACCAAGACCACAAGTCCCGAAATTTAGCTAATGGTTTCTTCGCTGAGAATGGTACAGTAGCTGCTGATGTCCCTATATCTGAAGCTGGAGATGGGGAGGGTGAGAGGTCTAATGAGAACGGTGGCAGTAGCGGTTTTTCTGCTATAACAGGGAAGGGGTTAGCCCTGAGACCGAAATCTGCAAGCCGGACTGCATTGTCTGCAGATGCTGAATCAAGTTGGTTGAATGCTATCCCAGTGGGCTTGGGAGACTCCATCATGCCTGAAGGGCTCACCTCGGTCCGCAAATCATCAAGCACACCAAGCCTACAAGAGCATGACCAGAATAATAGTTCCTCATCTGTATGGCCAACATCATGGAACTTGAAACCAGACTTGCAGGCTCTCTCTGCCAGACCAATCTTTGACGGTGTTCCAATCTTGGAAAGAGTGAAGGGACCTTTGGAGGAGGCCCTTTTAGATGTTGGTCTATTAGCTGAAAATATTCATGCAATTGAGGTTGTTGGCTTAAGTTCTCGTGTTCCTGCTATTATTAGGATATTAACAGAATTTTTTGGAAAGGAACCTAAGCGGACAATGAATGCAAGTGAGTGTATGGCTCTGGACAACGAAGCTCTACGATATTTGCTTCCGTACACTCAAGCTCCCTACACCCATCTTCCAATGGTTTCAGAGAAGAAACTCTCAAACCCAATGAGGGACATCAAGGCCCAGAAGCTCGTCCTCAACATCTCCATTGGAGAAAGTGGAGATCGCCTCACCAGAGCCGCTAAGATACATTCAATGCAGCTTCTTGAGAGTGGTTTGAAGGTCAAGGAATATGAGTTGCTGTTGAGGTCACTGGAGGGCCTGAAATTCCTTTCCACCCAGGGAGAGAGGACAAGCCGGAGCCACCACCTGAGGGTCGTCTGCCAGATGTGCCACAAGGAGCGCTCTGGATTTGAAGGACCTTGGACTTCCAATCCTCTGATCTTTGATAACAGCTACTTCACGGAACTCCTTGGCGAAGAAAAGGAAGGTCTTCTATAG 1488 46.98 MSGGGGGRCAATNSNSHVNGVNYILHTVSKMDTLAGVAIKYGVEVADIKRMNGLATDLQMFALKSLQIPLPGRHPPSPVLSNASTSSGERSTEETPLHLSHSNVLESLQSLGLKTPQKKVSPAMSTLQNYYGLKSQDKNQNGGAEGMEMTPSSNQDHKSRNLANGFFAENGTVAADVPISEAGDGEGERSNENGGSSGFSAITGKGLALRPKSASRTALSADAESSWLNAIPVGLGDSIMPEGLTSVRKSSSTPSLQEHDQNNSSSSVWPTSWNLKPDLQALSARPIFDGVPILERVKGPLEEALLDVGLLAENIHAIEVVGLSSRVPAIIRILTEFFGKEPKRTMNASECMALDNEALRYLLPYTQAPYTHLPMVSEKKLSNPMRDIKAQKLVLNISIGESGDRLTRAAKIHSMQLLESGLKVKEYELLLRSLEGLKFLSTQGERTSRSHHLRVVCQMCHKERSGFEGPWTSNPLIFDNSYFTELLGEEKEGLL* 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 14688579 14720793 - Vvi17g963 Vvi17g963 779660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g963 495 Gene3D - 297 343 - -
Vvi17g963 495 PRINTS Plant ascorbate peroxidase signature 463 487 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi17g963 495 PRINTS Plant ascorbate peroxidase signature 489 495 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi17g963 495 MobiDBLite consensus disorder prediction 132 160 - -
Vvi17g963 495 PANTHER PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN 14 292 - -
Vvi17g963 495 SMART LysM_2 25 69 IPR018392 -
Vvi17g963 495 SUPERFAMILY Actin-like ATPase domain 292 353 IPR043129 -
Vvi17g963 495 SUPERFAMILY Heme-dependent peroxidases 460 488 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi17g963 495 ProSiteProfiles LysM domain profile. 24 68 IPR018392 -
Vvi17g963 495 CDD LysM 26 68 IPR018392 -
Vvi17g963 495 Gene3D Peroxidase, domain 2 448 494 - -
Vvi17g963 495 MobiDBLite consensus disorder prediction 71 99 - -
Vvi17g963 495 PANTHER LOC443603 PROTEIN-RELATED 14 292 IPR045030 -
Vvi17g963 495 MobiDBLite consensus disorder prediction 242 270 - -
Vvi17g963 495 Pfam LysM domain 26 57 IPR018392 -
Vvi17g963 495 MobiDBLite consensus disorder prediction 78 99 - -
Vvi17g963 495 Gene3D LysM domain 10 75 IPR036779 -
Vvi17g963 495 Gene3D - 377 447 IPR022803 -
Vvi17g963 495 MobiDBLite consensus disorder prediction 178 199 - -
Vvi17g963 495 SUPERFAMILY LysM domain 24 64 IPR036779 -
Vvi17g963 495 Gene3D - 344 354 - -
Vvi17g963 495 Pfam Hsp70 protein 292 354 IPR013126 GO:0005524|GO:0140662
Vvi17g963 495 MobiDBLite consensus disorder prediction 244 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g963 - - - vvi:100266699 531.946
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g963 . . . . . . . . . Cmo18g00074 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00269 Csa01g00748 Chy12g01364 Cme12g01796 . . . . . . . . Sed08g2795 . . . Cma18g00098 . Car18g00087 Cpe09g01093 . Bhi08g01343 Tan05g2145 . Lac10g0322 . . . Cla01g01464 Cam01g1531 Cec01g1572 Cco01g1619 Clacu01g1556 Cmu01g1446 Cre01g1368 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1