Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g965 ATGCTTCGCTCAACTGGTGTCTCCCAATTCTGGGCCAAAACGACGTCGTCCCCACTGAAAACGACGTCGTTCAGGCTCATCTTCACCAACTCCACCCATGACGAAGATCTCTACGCCACTTTGCTCCGCAGATTCGCCGAAACCAGAGACTCCCAGCATGGCCGGGCACTCCACGCCAAGCTCATCAAAGGGCCTCTTCACAATTCTCTCTTCCTCAACAACCACATCCTCAACATGTACGCCAAATGCGGTCACTTGCCCCATGCGCACAAGCTGTTCGATCATTTTCCGCACAGAAATGCTGTGTCGTGGTCCGTCCTCATTGCGGGCTTTGTCCAGCACAACCGGCCCAGCTGCGCGCTGGTGCTATTCTCACAAATGCACGCTGCTGGAGTCAATATCAACGAGTTTACCTTGGTCAGCGCACTACACGCATGCTCATTGTATGATAATGATAGTGATAATAATGAAGGATATTACTATTCTTACTATCTGAGTCGTTTGTATCAAGTGTACGCCTTTGTTGTTCGGTTGGGATTTGAGTGGAATGTATTCTTGATGAACGTGTTTATGACAGCATTGATAAGAAGTAGGAAGTTGGCGGAGGCGTTGGAAGTTTTTGAGGCGTGTAGGGGCAAGGATGTTGTGTCGTGGAACGCAGTGATGGCGGGGTTGGTGCAGTTTTGTTGTGGGGAAGTGCCAGGGTTTTGGAGGAGGATGTGCTGTGAGGGAGTGAAGCCTGATAACTTCGCCTTTTCAGGAGTTCTTTCTGGGTTGGCTGCTCTTGGTGATGGTGGAATGGGGGTGCAAGTGCATGGACAGCTTGTGAAGTGTGGGCATGGAGGCGAGGTTTGCATTGGGAATTCGCTGGTTGATATGTATTTGAAGTGTGGAAGTTTGGAGAATGGCATCAAGGCTTTTGAGGAAATGGTGGAGCGCGATGTCTGTACTTGGAATCAGATGGCTGCAGGGTGCCTGAACTGTGGGAAACCGGGTAGAGCGCTTGAGTTGATTGAGGAAATGAGGAGAAGCGGTGTGAGAATGAACAAGTTCACCCTTGCCACTGCCCTTACTGCCTGTGCCAACTTGGCTTCCTTGGAGGAGGGGAAGAAAGCCCATGGATTAAGAATTAAGCTCGGGAATGATGTTGATGTCTGCGTGGATAATGCCTTGCTTGACATGTATGCCAAGTGTGGATCCATGGGTGATGCCCTGAAGGTCTTTGGGACAGTGGAGGCTCGTTCAGTTGTTTCATGGACAACCATGATCATGGGGTTTGCGCAAAATGGCCAAGCAAGGAAAGCACTTGAGATTTTTGAACAGATGAGAGCTGAGGGCAAAGCACCAAACTACATCACCTTCATTTGCGTGCTCTACGCATGTAGCCAAGGAGGGTTGATTAATGAAGGGTGGGAATATTTCTTGTCCATGGACCGGGACCATGGAATATCACCTGGAGAAGATCACTATGCATGTATGGTTGATATGCTTGGGCGAGCAGGACACATTAAAGAAGCACGTGAGCTAATAAGGAGGATGCCATTTCAGGCTAGTGTGCTAGTGTGGCAGACTCTGCTAGGAGCTTGCCGGGTTCATGGCGATGTGGAAACAGGATTACTTGCAGCAAAGCAGGCGTTGAGCTTGGACAAACACGATTCTTCAACTTATGTGGTATTATCAAACATGTTTGCTGACGGACGGAATTGGAAAGGTGTTGGTAGTTTGAGGGAACTGATGGAAACTAGAGATGTAAAGAAAATGCCCGGTTCAAGTTGGATTCAGCTAAACAAAAGGTAA 1797 48.91 MLRSTGVSQFWAKTTSSPLKTTSFRLIFTNSTHDEDLYATLLRRFAETRDSQHGRALHAKLIKGPLHNSLFLNNHILNMYAKCGHLPHAHKLFDHFPHRNAVSWSVLIAGFVQHNRPSCALVLFSQMHAAGVNINEFTLVSALHACSLYDNDSDNNEGYYYSYYLSRLYQVYAFVVRLGFEWNVFLMNVFMTALIRSRKLAEALEVFEACRGKDVVSWNAVMAGLVQFCCGEVPGFWRRMCCEGVKPDNFAFSGVLSGLAALGDGGMGVQVHGQLVKCGHGGEVCIGNSLVDMYLKCGSLENGIKAFEEMVERDVCTWNQMAAGCLNCGKPGRALELIEEMRRSGVRMNKFTLATALTACANLASLEEGKKAHGLRIKLGNDVDVCVDNALLDMYAKCGSMGDALKVFGTVEARSVVSWTTMIMGFAQNGQARKALEIFEQMRAEGKAPNYITFICVLYACSQGGLINEGWEYFLSMDRDHGISPGEDHYACMVDMLGRAGHIKEARELIRRMPFQASVLVWQTLLGACRVHGDVETGLLAAKQALSLDKHDSSTYVVLSNMFADGRNWKGVGSLRELMETRDVKKMPGSSWIQLNKR* 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 14953742 14955539 - Vvi17g965 Vvi17g965 779662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g965 598 Gene3D Tetratricopeptide repeat domain 469 596 IPR011990 GO:0005515
Vvi17g965 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 134 IPR002885 -
Vvi17g965 598 Pfam PPR repeat 102 132 IPR002885 -
Vvi17g965 598 Pfam PPR repeat 389 409 IPR002885 -
Vvi17g965 598 Pfam PPR repeat 490 513 IPR002885 -
Vvi17g965 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Vvi17g965 598 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 30 595 - -
Vvi17g965 598 Pfam PPR repeat family 415 461 IPR002885 -
Vvi17g965 598 Pfam PPR repeat family 313 362 IPR002885 -
Vvi17g965 598 Gene3D Tetratricopeptide repeat domain 164 273 IPR011990 GO:0005515
Vvi17g965 598 Gene3D Tetratricopeptide repeat domain 274 372 IPR011990 GO:0005515
Vvi17g965 598 Gene3D Tetratricopeptide repeat domain 15 156 IPR011990 GO:0005515
Vvi17g965 598 Gene3D Tetratricopeptide repeat domain 373 468 IPR011990 GO:0005515
Vvi17g965 598 TIGRFAM PPR: pentatricopeptide repeat domain 490 513 IPR002885 -
Vvi17g965 598 TIGRFAM PPR: pentatricopeptide repeat domain 417 450 IPR002885 -
Vvi17g965 598 TIGRFAM PPR: pentatricopeptide repeat domain 102 135 IPR002885 -
Vvi17g965 598 TIGRFAM PPR: pentatricopeptide repeat domain 452 486 IPR002885 -
Vvi17g965 598 TIGRFAM PPR: pentatricopeptide repeat domain 316 349 IPR002885 -
Vvi17g965 598 Pfam E motif 532 594 IPR046848 -
Vvi17g965 598 PANTHER OS07G0578800 PROTEIN-RELATED 30 595 IPR045215 GO:0003723|GO:0009451
Vvi17g965 598 SUPERFAMILY TPR-like 390 561 IPR011990 GO:0005515
Vvi17g965 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g965 - - - vvi:100261478 1186.4
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0364 . Lsi02g00268 Csa01g00746 Chy12g01366 Cme12g01798 . . Bda11g01566 . . . . . . . . . Cma18g00096 . Car18g00085 Cpe09g01095 . Bhi08g01339 . . . Hepe07g2325 . . Cla01g01466 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012247 1 4 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29