Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g981 | ATGCCTCTCAGATTTGAGGTCAAGAACAACTACCTTCACCTTCTTGAAGCTTGCATACAATCCAAATCCCTCACTGAAGCCAAGAAAATCCACCAGCATTTCCTCAAGAACACCAGCAACGCCGACAGCTCTGTGCTTCACAAGCTCACCCGCCTGTACCTCTCATGCAATCAGGTTGTACTCGCCCGCCGCCTGTTCGATGAAATTCCCAACCCAAGTGTGATTCTTTGGAACCAAATCATCAGAGCTTACGCTTGGAATGGACCTTTTGATGGGGCTATTGATTTGTACCACAGTATGCTCCACCTGGGTGTCAGACCCAATAAGTATACCTATCCGTTTGTGCTCAAAGCTTGTTCGGGTTTGCTGGCCATAGAAGACGGTGTTGAAATTCACAGCCACGCTAAGATGTTTGGGCTTGAGTCTGATGTGTTTGTCTGCACTGCTTTGGTTGATTTTTATGCTAAGTGTGGGATTTTGGTGGAGGCACAAAGATTGTTTAGTAGCATGTCACATAGAGATGTTGTCGCATGGAATGCGATGATTGCTGGATGCTCTCTATATGGTCTTTGTGATGATGCCGTACAGTTGATTATGCAAATGCAGGAAGAGGGCATATGTCCCAACTCTTCGACAATTGTAGGGGTTTTGCCAACTTGTCAGTGTTTGTTGTATGCCAGGAAGATTTTCGATGTAATGGGAGTCAGGAATGAGGTAAGTTGGAGTGCAATGATTGGAGGGTATGTTGCAAGTGATTGTATGAAAGAAGCATTAGATATTTTCCGAATGATGCAGTTGTCTGGTATTGATCCAGATTTGACAACCATGTTAGGTGTTCTTCCTGCTTGTTCCCACTTGGCTGCTCTGCAACATGGCTTTTGTAGCCATGGTTACTTAATTGTTCGAGGCTTTGCAACAGATACCCTAATTTGTAATGCTCTTATTGACATGTACTCCAAGTGTGGGAAGATCAGTTTCGCTAGGGAAGTTTTCAATAGGATGGATAGGCATGATATTGTCTCTTGGAATGCAATGATAATTGGATATGGAATTCATGGGCTTGGAATGGAAGCACTTGGCCTGTTCCATGACTTACTGGCCTTGGGTTTAAAGCCAGATGATATAACATTCATTTGTCTCTTATCTTCTTGCAGCCATTCAGGGCTTGTCATGGAAGGGAGACTCTGGTTTGATGCCATGAGTCGAGATTTCAGCATTGTCCCAAGGATGGAACATTGCATTTGCATGGTTGATATTCTTGGCCGTGCTGGACTTATAGACGAGGCTCACCATTTCATACGAAATATGCCATTTGAGCCTGATGTTCGCATATGGAGTGCTCTGCTTTCTGCCTGCAGGATCCATAAGAATATTGAACTTGGGGAAGAAGTATCTAAGAAGATCCAGAGTCTAGGACCTGAAAGTACCGGAAATTTTGTTCTTTTATCTAATATATACAGCGCTGCTGGAAGATGGGATGATGCAGCACATATTAGAATCACACAGAAAGATTGGGGTCTCAAGAAAATCCCAGGATGCAGTTGGATTGAGATAAATGGGATTGTTCATGCATTCGTTGGGGGCGACCAGTCCCATCTGCAGTTGTCACAGATAAACAGGAAACTAGAGGAACTGTTAGTGGAGATGAAAAGGTTGGGCTACCAAGCAGAGTGTAGCTTTGTCTTCCAAGATGTTGAAGAGGAGGAGAAGGAACAGATCCTCCTTTATCATAGTGAGAAGCTAGCTATTGCATTTGGAATTCTTAATCTGAAGGCTGGCAGGCCCATTCTTGTTACTAAGAATTTGCGGGTATGTGGTGATTGCCATACAGCAATAAAATTTATGACTCTCATTACAAAGAGAGAGATAACCGTAAGAGATGCGAATCGGTTTCATCATTTCAAGAATGGGACTTGCAACTGTGGAGATTTCTGGTGA | 1938 | 43.55 | MPLRFEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW* | 646 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 15915384 | 15917742 | - | Vvi17g981 | Vvi17g981 | 779678 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g981 | 645 | PANTHER | BNAC01G35250D PROTEIN | 10 | 81 | - | - | |
| Vvi17g981 | 645 | PANTHER | BNAC01G35250D PROTEIN | 220 | 261 | - | - | |
| Vvi17g981 | 645 | PANTHER | BNAC01G35250D PROTEIN | 255 | 639 | - | - | |
| Vvi17g981 | 645 | PANTHER | BNAC01G35250D PROTEIN | 64 | 219 | - | - | |
| Vvi17g981 | 645 | Gene3D | Tetratricopeptide repeat domain | 394 | 514 | IPR011990 | GO:0005515 | |
| Vvi17g981 | 645 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 237 | 271 | IPR002885 | - | |
| Vvi17g981 | 645 | Pfam | PPR repeat | 239 | 269 | IPR002885 | - | |
| Vvi17g981 | 645 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 174 | 208 | IPR002885 | - | |
| Vvi17g981 | 645 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 10 | 81 | - | - | |
| Vvi17g981 | 645 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 255 | 639 | - | - | |
| Vvi17g981 | 645 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 64 | 219 | - | - | |
| Vvi17g981 | 645 | Pfam | E motif | 455 | 517 | IPR046848 | - | |
| Vvi17g981 | 645 | Pfam | DYW family of nucleic acid deaminases | 553 | 645 | IPR032867 | GO:0008270 | |
| Vvi17g981 | 645 | TIGRFAM | PPR: pentatricopeptide repeat domain | 239 | 272 | IPR002885 | - | |
| Vvi17g981 | 645 | TIGRFAM | PPR: pentatricopeptide repeat domain | 76 | 108 | IPR002885 | - | |
| Vvi17g981 | 645 | TIGRFAM | PPR: pentatricopeptide repeat domain | 310 | 340 | IPR002885 | - | |
| Vvi17g981 | 645 | TIGRFAM | PPR: pentatricopeptide repeat domain | 176 | 210 | IPR002885 | - | |
| Vvi17g981 | 645 | TIGRFAM | PPR: pentatricopeptide repeat domain | 340 | 373 | IPR002885 | - | |
| Vvi17g981 | 645 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 73 | 107 | IPR002885 | - | |
| Vvi17g981 | 645 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 307 | 341 | IPR002885 | - | |
| Vvi17g981 | 645 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 220 | 261 | - | - | |
| Vvi17g981 | 645 | Gene3D | Tetratricopeptide repeat domain | 222 | 294 | IPR011990 | GO:0005515 | |
| Vvi17g981 | 645 | Gene3D | Tetratricopeptide repeat domain | 3 | 124 | IPR011990 | GO:0005515 | |
| Vvi17g981 | 645 | Gene3D | Tetratricopeptide repeat domain | 296 | 393 | IPR011990 | GO:0005515 | |
| Vvi17g981 | 645 | Gene3D | Tetratricopeptide repeat domain | 125 | 221 | IPR011990 | GO:0005515 | |
| Vvi17g981 | 645 | Coils | Coil | 535 | 555 | - | - | |
| Vvi17g981 | 645 | Pfam | PPR repeat family | 338 | 385 | IPR002885 | - | |
| Vvi17g981 | 645 | Pfam | PPR repeat family | 173 | 213 | IPR002885 | - | |
| Vvi17g981 | 645 | Pfam | PPR repeat family | 72 | 119 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g981 | - | - | - | vvi:100251168 | 885.945 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi17g981 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |