Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g982 ATGGTTAGGAAGAGGAGAACTGAACTTCCCACTGCCAGCAGTGGGGAGAGCTCGGAGTCCACTCAGGAAGCTAGTGGAGCTAGTGGAGGGGGTAGAGGTTGGGCTCCTCAATCACAACAAAGCGGGCGCGGTGGGTATGCAGGTGGCCGGGGTCCTCAGCGTGGTGGAATGGCTCCACAACAGCAATACACTGTCCCGACTGAATATCAAGGTCGGGGTCGTGGAGGAGGAGCACCACCTCAGCAACCTCCTGCAGCAGCTGCTGCTTATGAGTCTGGAAGCAGAAGCCGAGCTCGTGTGGGTGGTGGCCGTGGGGTAGAGCCAGTGTCTTCTGGTGGCCCTCCTTCTAAGCCGTTAAGTTCCGATCTGCACCAAGCTACGCAGGCGAGTTATGCAGCCGGGGGAACTCCTCATCGCGTTCCCTCTGAAGCCAGTTCATCACGTCAGGCTGCTGAGTCTTTGACACAGCAGCTACAGAAGGTTTCTATCCAGCAGGAGGTGCCTCCCAGCCAGGCAATTCAGCCTGTCGCTCCCTCCAGCAAATCAATGAGGTTTCCTCTTCGACCAGGCAAGGGAGTTACTGGTAAGAAGTGTATAGTCAAGGCTAATCACTTCTTTGCTGAACTTCCAGATAAAGATTTACACCAGTATGATGTGTCAATTAATCCGGAGGTTACATCAAGGGGGGTGAACCGTGCTGTGATGGAACAGCTGGTGAAATTGTACCGGGAGTCACATCTTGGAAAGCGACTCCCTGCCTACGATGGAAGGAAAAGTCTGTATACTGCTGGGCCGCTTCCTTTCATTTCAAAAGAGTTTATGATAACTCTCATAGATGAAGATGATGGAACAGGCGCCCCCAGGAGAGAGAGGGAATTCAAAGTTGTGATCAAACTGGCTGCACGTGCTGATCTACACCATTTAGGACTGTTCTTACAGGGGAGGCAAGCTGATGCTCCCCAAGAAGCTCTTCAGGTTCTTGACATTGTTTTGCGCGAGTTGCCTACAACTAGGTACTGTCCCGTGGGGCGATCATTTTATTCTCCTGATCTAGGGAGAAGGCAGCCATTGGGTGAGGGTTTGGAAAGTTGGCGTGGTTTCTATCAGAGTATTCGGCCAACTCAGATGGGACTGTCACTGAATATTGATATGTCCTCGACTGCTTTTATTGAGCCATTGCCTGTCATTGATTTTGTGACACAGCTTCTGAATCGGGATGTTTCTTCCCGACCATTATCTGATGCTGATCGTGTAAAGATTAAGAAGGCTCTCAGAGGAGTCAAAGTTGAAGTTACTCATCGGGGAAATATGCGCAGAAAATATCGTATATCTGGCTTAACATCACAAGCAACACGTGAATTGACTTTTCCTGTTGATGATAGAGGAACCATGAAATCTGTCGTTGAGTACTTCTATGAAACATATGGGTTTGTCATTCAGCATTCTCAATGGCCTTGTCTGCAAGTGGGAAATCAACAGAGGCCAAATTATTTGCCTATGGAGGTTTGCAAGATTGTTGAAGGCCAAAGATATTCCAAGAGGTTGAATGAGAGGCAGATTACTGCTTTACTGAAGGTGACTTGTCAGCGTCCTCAAGAAAGGGAGCATGACATAATGCAGACGGTTCACCATAATGCTTATCATGAGGATCCTTATGCTAAGGAGTTTGGTATCAAAATCAGTGAGAAGCTCGCTTCAGTTGAAGCTCGCATTTTACCTGCTCCATGGCTTAAATACCATGATACGGGAAGGGAAAAGGATTGTCTGCCTCAAGTTGGCCAGTGGAATATGATGAATAAGAAAATGGTCAATGGTGGAACTGTCAACAATTGGATTTGCATAAATTTTTCACGTGGAGTACAAGAGAGTGTGGCTCGTGGGTTCTGTCAGGAGCTTGCACAAATGTGTTATATTTCTGGCATGGCATTTAATCCGGAACCAGTACTTCCACCAATTACTGCACGTCCTGATCAGGTGGAGAGAGTTTTGAAGGCAAGGTTTCATGAAGCCATGACCAAACTCCAGCCACAGGGCAAGGAGCTTGATTTGCTTATTGTTATTTTGCCAGATAATAATGGTTCACTCTATGGTGATTTGAAACGAATCTGTGAGACAGATCTTGGGCTTGTTTCACAGTGTTGCTTACATAAACATGTGTATAGAATGAGTAAGCAATATCTGGCAAATGTGGCATTGAAGATTAATGTAAAGGTTGGAGGGAGAAATACGGTGCTTGTTGATGCAATATCAAGGCGCATACCTCTGGTCAGTGATCGGCCTACTATCATTTTTGGGGCTGATGTTACCCATCCTCACCCAGGAGAGGATTCAAGCCCATCTATTGCTGCTGTTGTCGCCTCTCAAGATTGGCCCGAGATTACAAAATATGCTGGTTTGGTTTGTGCTCAGGCCCATCGACAGGAGCTCATCCAAGATCTTTATAAGACTTGGCAGGATCCTGTAAGAGGAACTGTGTCTGGTGGAATGATCAAAGAACTGCTTATATCTTTCCGTAGAGCAACTGGGCAGAAACCTCAGCGCATAATATTCTATAGGGATGGGGTCAGTGAAGGGCAGTTCTATCAAGTCTTACTATATGAACTTGATGCTATTCGTAAGGCATGTGCATCTTTGGAGCCAAACTATCAGCCTCCTGTGACATTTGTTGTGGTTCAGAAACGCCATCATACTAGATTGTTTGCGAACAACCATAATGACCGGAATGCAGTTGACAAGAGTGGGAATATATTACCTGGTACTGTTGTAGATTCTAAGATCTGCCATCCTACTGAGTTTGACTTTTACCTGTGCAGCCATGCTGGCATTCAGGGCACAAGCCGACCTGCCCATTACCATGTGTTGTGGGATGAAAACAAGTTCACAGCTGATGGGCTGCAGTCCCTCACAAACAACCTCTGCTACACATATGCTAGGTGCACACGCTCTGTTTCCATCGTGCCCCCTGCATACTATGCTCATCTGGCTGCTTTCCGAGCACGCTTCTATATGGAGCCAGAGACATCAGATAGTGGGTCAATGACAAGCGGTGCTGCTGCTGCCGTTAGACCCCTCCCGGCCCTCAAGGAGAATGTCAAGAGGGTCATGTTTTACTGTTAG 3117 47.32 MVRKRRTELPTASSGESSESTQEASGASGGGRGWAPQSQQSGRGGYAGGRGPQRGGMAPQQQYTVPTEYQGRGRGGGAPPQQPPAAAAAYESGSRSRARVGGGRGVEPVSSGGPPSKPLSSDLHQATQASYAAGGTPHRVPSEASSSRQAAESLTQQLQKVSIQQEVPPSQAIQPVAPSSKSMRFPLRPGKGVTGKKCIVKANHFFAELPDKDLHQYDVSINPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFISKEFMITLIDEDDGTGAPRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDDRGTMKSVVEYFYETYGFVIQHSQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPQEREHDIMQTVHHNAYHEDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWICINFSRGVQESVARGFCQELAQMCYISGMAFNPEPVLPPITARPDQVERVLKARFHEAMTKLQPQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLHKHVYRMSKQYLANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHNDRNAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAAAAVRPLPALKENVKRVMFYC* 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 15920268 15928175 + Vvi17g982 Vvi17g982 779679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g982 1038 Pfam Argonaute linker 1 domain 341 391 IPR014811 -
Vvi17g982 1038 ProSiteProfiles PAZ domain profile. 393 507 IPR003100 GO:0005515
Vvi17g982 1038 MobiDBLite consensus disorder prediction 11 44 - -
Vvi17g982 1038 CDD PAZ_argonaute_like 392 506 - -
Vvi17g982 1038 PANTHER PROTEIN ARGONAUTE 1A 86 1024 - -
Vvi17g982 1038 SUPERFAMILY Ribonuclease H-like 678 1004 IPR012337 -
Vvi17g982 1038 SMART DUF1785_2 340 392 IPR014811 -
Vvi17g982 1038 CDD Piwi_ago-like 551 1003 IPR045246 -
Vvi17g982 1038 MobiDBLite consensus disorder prediction 140 178 - -
Vvi17g982 1038 Gene3D - 571 746 - -
Vvi17g982 1038 Pfam PAZ domain 397 522 IPR003100 GO:0005515
Vvi17g982 1038 Gene3D - 752 1038 IPR036397 GO:0003676
Vvi17g982 1038 Gene3D paz domain 386 511 - -
Vvi17g982 1038 SUPERFAMILY PAZ domain 199 545 IPR036085 GO:0005515
Vvi17g982 1038 MobiDBLite consensus disorder prediction 114 132 - -
Vvi17g982 1038 Pfam Argonaute linker 2 domain 533 579 IPR032472 -
Vvi17g982 1038 ProSiteProfiles Piwi domain profile. 683 1004 IPR003165 GO:0003676
Vvi17g982 1038 SMART Piwi_a_2 683 1004 IPR003165 GO:0003676
Vvi17g982 1038 Pfam Piwi domain 684 1003 IPR003165 GO:0003676
Vvi17g982 1038 Pfam Glycine-rich region of argonaut 66 176 IPR024357 -
Vvi17g982 1038 Pfam Mid domain of argonaute 590 664 IPR032473 -
Vvi17g982 1038 MobiDBLite consensus disorder prediction 1 187 - -
Vvi17g982 1038 SMART PAZ_2_a_3 397 529 IPR003100 GO:0005515
Vvi17g982 1038 Pfam N-terminal domain of argonaute 196 331 IPR032474 -
Vvi17g982 1038 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 86 1024 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g982 K11593 - vvi:100256320 1942.55