Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g989 ATGGAGTACGGCTCAGGCGGAGGCGGCGGTGGTTCCGGTGGCTCAGGTGGGGACCCCGATGGCTCGGACTCCAGGAGGAAGAAGCGGTACCATCGCCACACTGCCCATCAGATTCAGAGACTTGAAGGGATGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAGAGGCTGCAGTTGAGCAGAGAGTTGGCTTTGGCTCCCAGGCAGATCAAATTTTGGTTTCAAAATAGGAGGACCCAGATGAAGGCCCAACACGAGAGAGCTGATAACTGTGCTCTTCGTGTGGAGAACGATAAGATCCGTTGTGAAAACATAGCCATTAGAGAGGCTCTCAAGAATGTGATTTGCCCGTCTTGTGGTGGCCCTCCAATTGGGGAGGATTCATATTTTGATGAACAGAAGTTGAGGGTTGAGAATGCCCAATTGAAAGAAGAGCTTGATAGAGTTTCTAGCATTGCTGCCAAGTACATAGGGCGGCCGATTTCACAGCTCCCACCAGTACAGCCTGTCCATATTTCTTCATTGGATTTGTCAATGGGAAGCTTTGGGGGGCAGGGGATGGGCAGTGGCCCTTCCCTTGATCTTGATCTTCTTCCTGGAAGTTCATCTGCTATGCCCATTTTGCCTTTCCAGGGGACTGGTATTTCAGATATGGATAAGTCCCTCATGGCAGATGTTGCTGGCAATGCATTGGATGAATTGCTTAGGCTTTTGCAGACCAACGAACCCTTGTGGATGAAGTCCACCACTGATGGGAGGGATGTTCTTAATCTTGAAAGCTATGAGAGGATTTTTCCTCGGGCTAATAGTCACTTGAAAAACCCTAATGTGAGGATTGAGGCATCAAGAGATTCAGGTGTTGTGATCATGAACAGTTTGGCATTGGTTGACATATTTATGGACTCGAACAAATGGATGGAGCTATTTCCGACAATTGTTTCAATGGCGAGAACACTTGAAGTATTATCATCCGGAATGATGGGTGGTCAGAGCGGTTCCCTTCAACTGATGTATGGAGAGCTGCAGGTGCTTTCATCCCTTGTACCTACTCGGGAATTCTATTTCCTCAGATATTGTCAACAAATTGAACAAGGCTCATGGGCAATAGTTGATGTTTCTTATGATTTCCCCCGAGACAACCAGTTTGCCCCTCAAAATCCATCTCATAGGCTTCCTTCTGGCTGCTTGATTCAAGATATGCCCAATGGATACTCCAAGGTTACTTGGGTGGAACATGTGGAAATCGAAGACAAAACCCCAACTCATCGGCTTTATAGAGATCTTATTCACAGAGGGTTAGCATTTGGAGCTGAACGGTGGCTGGCTACTCTACAGAGGATGTGCGAGAGATTTGCTTGTTTGATGGTTAAAGGAACTTCAACTCGGGATCTTGGAGGAGTGATTCCATCTCCTGATGGCAAGAGAAGCATGATGAAACTTGCCCAGAGGATGGTCAACAATTTCTGTGCAAGCATCAGCACCTCCAATGGACACCGATGGACAACACTCTCTGGGCTGAATGAGGTTGGAGTCCGGGTCACAATTCACAAGAACACTGATCCTGGCCAACCCAACGGTGTGGTTCTCAGTGCGGCTACCACCATCTGGCTCCCAGTTTCTCCACAAAATGTCTTCAATTTCTTCAGGGACGAAAGGACTCGGCCTCAGTGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGGGCCTTCAACACCAGTCAGAACAACATGCTGATACTCCAAGAGAGCTGCATAGACTCATCAGGTTCCCTAGTCATCTACTGCCCAGTTGATCTACCTGCCATCAACATAGCAATGAGCGGGGAGGACCCTTCCTACATACCCCTGCTGCCATCGGGTTTCACCATCTCACCAGATGGGCGACTAGACCAAGGGGACGGGGCCACACAGCAAGAACATCGTATGGTTCGGGTATTGACTTGTGTTGATGAACATCATTTTTACCTATGA 2025 48.44 MEYGSGGGGGGSGGSGGDPDGSDSRRKKRYHRHTAHQIQRLEGMFKECPHPDEKQRLQLSRELALAPRQIKFWFQNRRTQMKAQHERADNCALRVENDKIRCENIAIREALKNVICPSCGGPPIGEDSYFDEQKLRVENAQLKEELDRVSSIAAKYIGRPISQLPPVQPVHISSLDLSMGSFGGQGMGSGPSLDLDLLPGSSSAMPILPFQGTGISDMDKSLMADVAGNALDELLRLLQTNEPLWMKSTTDGRDVLNLESYERIFPRANSHLKNPNVRIEASRDSGVVIMNSLALVDIFMDSNKWMELFPTIVSMARTLEVLSSGMMGGQSGSLQLMYGELQVLSSLVPTREFYFLRYCQQIEQGSWAIVDVSYDFPRDNQFAPQNPSHRLPSGCLIQDMPNGYSKVTWVEHVEIEDKTPTHRLYRDLIHRGLAFGAERWLATLQRMCERFACLMVKGTSTRDLGGVIPSPDGKRSMMKLAQRMVNNFCASISTSNGHRWTTLSGLNEVGVRVTIHKNTDPGQPNGVVLSAATTIWLPVSPQNVFNFFRDERTRPQWDVLSNGNAVQEVAHIANGPHPGNCISVLRAFNTSQNNMLILQESCIDSSGSLVIYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGRLDQGDGATQQEHRMVRVLTCVDEHHFYL* 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 16227030 16230509 - Vvi17g989 Vvi17g989 779686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g989 674 SMART START_1 225 450 IPR002913 GO:0008289
Vvi17g989 674 SUPERFAMILY Bet v1-like 217 451 - -
Vvi17g989 674 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 4 653 - -
Vvi17g989 674 CDD START_ArGLABRA2_like 220 449 - -
Vvi17g989 674 MobiDBLite consensus disorder prediction 1 33 - -
Vvi17g989 674 Gene3D - 225 450 IPR023393 -
Vvi17g989 674 Pfam Homeodomain 27 82 IPR001356 GO:0003677
Vvi17g989 674 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 4 653 IPR042160 -
Vvi17g989 674 SMART HOX_1 25 88 IPR001356 GO:0003677
Vvi17g989 674 ProSitePatterns 'Homeobox' domain signature. 59 82 IPR017970 GO:0000981|GO:0006355
Vvi17g989 674 SUPERFAMILY Homeodomain-like 19 87 IPR009057 -
Vvi17g989 674 ProSiteProfiles START domain profile. 216 453 IPR002913 GO:0008289
Vvi17g989 674 SUPERFAMILY Bet v1-like 471 645 - -
Vvi17g989 674 CDD homeodomain 26 85 IPR001356 GO:0003677
Vvi17g989 674 Coils Coil 132 152 - -
Vvi17g989 674 Pfam START domain 226 450 IPR002913 GO:0008289
Vvi17g989 674 Gene3D - 18 95 - -
Vvi17g989 674 ProSiteProfiles 'Homeobox' domain profile. 24 84 IPR001356 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14251 PF01852 START 1.40E-49 CL0209 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g989 K09338 - vvi:100251182 1265.37