Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g99 ATGGAAGGCCACCAAATACTTTTTCCCGGTTCATCAAAATCACCCGCAAATCCTTTTCCACCAAACATGGCAAATTTTCATGCTATGAACATTTATAAGAGTGCTGGTTTTGATGCCTCTGAGACCAAGGAAAAACCAGGTAAAAAGGAAGGTCAAAAGAAGATTAGAAAGCACAGATTTGCGTTTCAAACGAGGAGCCATGTTGATATCCTTGATGATGGGTATCGATGGAGGAAATATGGGCAGAAAGCAGTCAAGAACAACAAATTTCCCAGAAGCTACTACCGGTGCACGTATAAAGACTGCAATGTGAAGAAGCAGGTCCAACGCCTCTCAAAAGATGAAGAGATTGTAGTCACAACCTATGAAGGCATTCATACACACCCTGTGGAGAAGCCCACCGAGAACTTTGAACACATCTTGAGGCAGATGCAATCATATTTTCCCATCTCATGA 456 42.32 MEGHQILFPGSSKSPANPFPPNMANFHAMNIYKSAGFDASETKEKPGKKEGQKKIRKHRFAFQTRSHVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYKDCNVKKQVQRLSKDEEIVVTTYEGIHTHPVEKPTENFEHILRQMQSYFPIS* 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 922599 925171 - Vvi17g99 Vvi17g99 778796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g99 151 SUPERFAMILY WRKY DNA-binding domain 63 130 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi17g99 151 MobiDBLite consensus disorder prediction 1 20 - -
Vvi17g99 151 Gene3D WRKY domain 55 131 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi17g99 151 SMART WRKY_cls 71 130 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi17g99 151 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 1 147 - -
Vvi17g99 151 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 147 IPR044810 GO:0003700
Vvi17g99 151 Pfam WRKY DNA -binding domain 72 129 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi17g99 151 ProSiteProfiles WRKY domain profile. 66 131 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14252 PF03106 WRKY 1.00E-26 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g99 - - vvi:100232957 300.441