Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g992 ATGGACAACAGGTCAGAAGTATTAGAAATGAGTGATCTTGAAAAAGATGAGACGCCAATGCTTTCAGAGGCTCATTCACAATATTTGGATGAACCTAGGGTTTCTCACTCGCATAGACGTACCTCTAGAAATCGGAGTGCATCCATTTCCATTCCTATGAACTCCATGGAGTCCTATCAAACTGAAAGCAGCCTTGTAAGTCATACTGGTCCCTTGAGGAATGAAAAGAAAACTCCGTTCATACCAATGAGTGGCCCACTGTTAAAATCTGAGGGCTTATTTCCACCTACTCCTGGTGTACGGGGCCACAGAAAGGCAGAGCCAAGGGCAGAAAATTTTCCTTCATTTAATGGAATGGAATGGAATAATCGGCCCCATAACAACTATGCTGGAAAAAATGAACATCTTCTGAGATCTGGACAGTTGGGAGTATGTAATGATCCTTACTGCACAATATGCCCAACACATTTCATTGACTCTAGACAGCAAAGGAACTCAAAGTTTCATTCTGCTTTCTATGGAGATGCTAGAGGATGGGCAAGGAGATTTTTTTCTTCTCTACAATCATATGTTCCTGGAATCATGAACCCTCATACTAAAGTTGTTCAACGATGGAACAGATTTTTTGTCATTTCTTGCTTGTTGGCAATTTTTGTGGACCCTTTATTTTTCCTCTTGCTGTCTGTGCAACAGGAAAATAAGTGCATAATTATTGACATGCCCCTAACAAAAACAATTGTGGTATTCAGAAGCATGACTGATTTCATTTACCTGTTAAACATGCTTCTACAGTTTAGGCTTGCCTATGTTGCTCCAGAGTCTAGAGTGGTTGGTGCTGGCGACCTAGTTGACCATCCAAAAAAAATTGCTATCCATTACCTTTGTGGATATTTTTTAATTGATTTATTTATTGTTTTACCGCTTCCTCAAATCATGATTTTGCTGGTCCTACCCATGTCCTTGGGAACATCTGGGGCAAATTATGCAAAGAATCTTTTGCGCACAGCAGTTCTTGTTCAGTACATTCCCAGGTTGTACAGGTTTCTACCTTTCCTTGCTGGTCAGTCTCCAAGTGGCTTCATATTTGAGTCAGCATGGGCGAATTTTGTTATAAATCTTCTCACTTTTGTGTTGTCTGGTCATGTTGTGGGGTCATGCTGGTACCTCTTTGGCTTACAGAGGGTAAATCAATGTCTTCGAGATGCCTGCCATAACTCCATAATAAAAAATTGTATGGATTTCATTGATTGTGGTCATGGGGAGAAAGTTAGAGATTTTAGAGATTTGCGAAATTTAGATTGGCAACCCTGGAAAAGCAATGAAAATGCTAGTGCTTGTTTCAGCGATGATGGTTTCCCGTATGGGATCTACACTAAAGCTGTCATTCTTACCACAAAACCTAGTATTGTGACGAGATATACATATTCATTGTTTTGGGGGTTCCAGCAAATCAGTACTTTGGCTGGGAATCAAACTCCGAGCTATTTTCTTTGGGAAGTCCTTTTTACTATGGGCATTATTGGTCTAGGCTTGTTGCTCTTTGCTCTTCTAATTGGAAATATGCAGAACTTCCTACAGGCTCTTGGACGAAGAAGGTTAGAAATGTCACTACGACGTCGTGATGTTGAGCAGTGGATGAGCCATCGACGGTTGCCTGAAGATCTTAGAAGGCAAGTACGTCAGGCAGAACGCTATAATTGGGCTGCCACCAGAGGGGTAAATGAAGAAATGCTAATGGAAAATTTGCCTGAAGATCTCCAAAGAGAAATACGACGCCATCTCTTCAAATTTGTAAAGAATGTCCACATTTTTTCCAAGATGGGTGATTCCAAGATGGGTGATACGATCTTAGATGCCATTTGTGAGAGACTAAGACAAAAAACATACATCAAAGGAAGCAAAATTTTATGTGATGGAGGTCTAATTGAGAAGATGGTTTTTATTGTGCGCGGGAAGATGTTGAGCAATGGAGTTGCAACTCCCTTAGGTGAAGGGGATGTTTGTGGCGAGGAACTTCTTGCTTGGTGTATTGAGAATTCTTCAGTGAACAAAGATGGTAAAAAAATCAGGTTTCCAGGACAGCGATTGCTGAGCAACAGGGATGTAGAGTGTTTAACAAATGTAGAAGCATTTATTCTCCGAGCTGCAGATATTGAAGAAGTCACGGGTATTTTCTCAAGATTTTTGCGGAATCCAAAGGTTCAAGGAGCCATAAGGTATCAATCCCCTTACTGGAGAACTTTTGCAGCAACCCGGATTCAAGTAGCATGGAGATACAGGAAGAAGTGTCTGAGCCGTGCAGACACATCCAATACTCAGTTCAACCACTTGTAG 2334 41.09 MDNRSEVLEMSDLEKDETPMLSEAHSQYLDEPRVSHSHRRTSRNRSASISIPMNSMESYQTESSLVSHTGPLRNEKKTPFIPMSGPLLKSEGLFPPTPGVRGHRKAEPRAENFPSFNGMEWNNRPHNNYAGKNEHLLRSGQLGVCNDPYCTICPTHFIDSRQQRNSKFHSAFYGDARGWARRFFSSLQSYVPGIMNPHTKVVQRWNRFFVISCLLAIFVDPLFFLLLSVQQENKCIIIDMPLTKTIVVFRSMTDFIYLLNMLLQFRLAYVAPESRVVGAGDLVDHPKKIAIHYLCGYFLIDLFIVLPLPQIMILLVLPMSLGTSGANYAKNLLRTAVLVQYIPRLYRFLPFLAGQSPSGFIFESAWANFVINLLTFVLSGHVVGSCWYLFGLQRVNQCLRDACHNSIIKNCMDFIDCGHGEKVRDFRDLRNLDWQPWKSNENASACFSDDGFPYGIYTKAVILTTKPSIVTRYTYSLFWGFQQISTLAGNQTPSYFLWEVLFTMGIIGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEDLRRQVRQAERYNWAATRGVNEEMLMENLPEDLQREIRRHLFKFVKNVHIFSKMGDSKMGDTILDAICERLRQKTYIKGSKILCDGGLIEKMVFIVRGKMLSNGVATPLGEGDVCGEELLAWCIENSSVNKDGKKIRFPGQRLLSNRDVECLTNVEAFILRAADIEEVTGIFSRFLRNPKVQGAIRYQSPYWRTFAATRIQVAWRYRKKCLSRADTSNTQFNHL* 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 16330181 16454350 - Vvi17g992 Vvi17g992 779689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g992 777 Pfam Ion transport protein 205 531 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi17g992 777 SUPERFAMILY cAMP-binding domain-like 531 728 IPR018490 -
Vvi17g992 777 MobiDBLite consensus disorder prediction 1 46 - -
Vvi17g992 777 CDD CAP_ED 610 721 IPR000595 -
Vvi17g992 777 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 15 769 - -
Vvi17g992 777 Gene3D Jelly Rolls 601 727 IPR014710 -
Vvi17g992 777 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 15 769 - -
Vvi17g992 777 MobiDBLite consensus disorder prediction 1 21 - -
Vvi17g992 777 Gene3D Helix hairpin bin 526 595 - -
Vvi17g992 777 SUPERFAMILY Voltage-gated potassium channels 197 532 - -
Vvi17g992 777 Gene3D - 204 525 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g992 K05391 - vvi:100246030 1564.67