Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g994 ATGGACAACAGGTCAAAAGTATTAGAAATGAGTGATCTTGAAAAAGATGAGACGCCAATGCTTTCAGACGCTTATTCACAATATTTGGATAAACCTAGGGTTTCTCACTCGGATAGACTTACCTCTAGAAATCGGAGTGCATCCAGTTCCATTCCTATGAACTCCATGGAGTCCTATCAAACTGAAAGCAACCTTGTAAATCATACTGGTCCCTTGAGGAATGAAAAGAAAACTCCGTTCATACCAATGAGTGGCCCACTGTTAAAATCTGAGGGTTTTTTCCCACCTACTCCTGGTGTACGGGGCCACAGAAAGGCAGAGCCAAGGGCAGAAAAATTTCCTTCATTTAATGGAATGGAATGGAATAATTGGCCCCATAACAACTATGCTGGAAAAAATGAACATCTTCTGAGGTCTGGACAGTTGGGAGTATGTAATGATCCTTACTGCACAATATGCCCAACACATTTCATTGACTCCAGACAGCAAAGGAACTCAAAGTTTCATAATGCTTTCTATGGAGATGCTAGAGGATGGGCAAGGAGATTTTTTTCTTCTCTACAATCATATGTTCCTGGAATCATGAACCCTCATACTAAAGTTGTTCAACAATGGAATAGATTTTTTGTCATTTCTTGCTTGTTGGCAATTTTTGTAGACCCTTTATTTTTCCTCTTGCTGTCTGTGCAACAGGAAAATAAGTGCATAATTATTGACTTGTCCCTGACAAAAACAATTGTGGCTTTCAGAAGCATGACTGATTTCATTTACTTGTTGAACATGCTTCTACAGTTTAGGCTGGCCTATGTTGCTCCAGAGTCTAGAGTGGTTGGTGCCGGCGACTTAGTTGACCATCCAAAAAAAATTGCTATCCATTACCTTCATGGATATTTTTTAATTGATTTATTTATTGTTTTACCGCTTCCTCAAATCATGATTTTGCTGGTCCTACCCATGTCCTTGGGATCATCTGGCGCAAATTATGCAAAGAATCTTTTGCGCACAGCAGTTCTTGTTCAGTACATTCCCAGGTTGTACAGGTTTCTCCCTTTCCTCGCTGGCCAGTCTTCAAGTGGTTTCATATTTGAGTCAGCATGGACGAATTTTGTTATAAATCTTCTCACTTTTGTGTTGTCTGGTCATGTCGTGGGATCATGCTGGTACCTCTTTGGTTTACAGAGAGTAAATCAGTGTCTTCGAGATGCCTGCCATGACTCCAAAATCGATAAGTGTATGGATTTCATTGATTGTGGTCATGGGGACAAAATCGGAGATTTTATGCCACTTCCAGGATGGCCGCTCTGGAAAAGCAATGAAAATGCTAGTGCTTGTTTCAGTGATGATGGTTTCCCATATGGGATCTACACTCAAGCTGTCAATCTTACCACAAAACATAGCATTGTGACAAGATATACATATTCATTGTTTTGGGGGTTCCAGCAAATCAGTACTTTGGCTGGGAATCAAACTCCAAGCTATTTTCTTTGGGAAGTCATTTTTACTATGGCCATTATTGGTCTAGGCCTGTTGCTCTTTGCTCTTCTAATTGGAAATATGCAGAACTTCCTACAGGCTCTTGGACGGAGAAGGTTAGAAATGTCACTACGACGTCGTGATGTTGAGCAGTGGATGAGCCATCGACGGTTGCCTGAATATCTTAGAAGGCAAGTACGTCAGGCAGAACGTTATAATTGGGCTGCCACCAGAGGGGTAAATGAAGAGATGCTAATGGAAAATTTGCCTGAAGATCTCCAACGAGAAATACGACGCCATCTCTTCAAATTTATCAAGAATATCCACATTTTTTCTAAGATGGGCGATTCCAAGATGGGTGATACGATCTTAGATGCCATTTGTGAGAGGCTAAGACAAAAAACATACATCATGGGAAGCAAAATTTTATGTCATGGAGGTCTAATTGAGAAGATGGTTTTTATTGTGCGCGGGCAGATGTCGAGCATTGGAGTTGCAACTCCTTTAGGTGAATGGGATGTTTGTGGTGAGGAACTTCTTGCTTGGTGTATTGAGAATTCTTCAGTGAATAAAGATGGTAAAAAAATCAGGTTTCCAGGACAGAGATTGCTGAGCAACAGGGATGTAGTGTGTTTAACAAATGTAGAAGCATTTATTCTCCGAGCTGCAGATATTGAAGAAGTCACGGGTATTTTCTCAAGATTTTTGCGGAATCCAAAGGTTCAAGGAGCCATAAGGTATCAATCCCCTTACTGGAGAACTTTTGCAGCAACCCGGATTCAAGTAGTATGGAGATACAGGAAGAAGTGTCTGAGCCGTGCAAACACGTCCAATACCCAGTTCAACAGCTTGTAG 2328 41.07 MDNRSKVLEMSDLEKDETPMLSDAYSQYLDKPRVSHSDRLTSRNRSASSSIPMNSMESYQTESNLVNHTGPLRNEKKTPFIPMSGPLLKSEGFFPPTPGVRGHRKAEPRAEKFPSFNGMEWNNWPHNNYAGKNEHLLRSGQLGVCNDPYCTICPTHFIDSRQQRNSKFHNAFYGDARGWARRFFSSLQSYVPGIMNPHTKVVQQWNRFFVISCLLAIFVDPLFFLLLSVQQENKCIIIDLSLTKTIVAFRSMTDFIYLLNMLLQFRLAYVAPESRVVGAGDLVDHPKKIAIHYLHGYFLIDLFIVLPLPQIMILLVLPMSLGSSGANYAKNLLRTAVLVQYIPRLYRFLPFLAGQSSSGFIFESAWTNFVINLLTFVLSGHVVGSCWYLFGLQRVNQCLRDACHDSKIDKCMDFIDCGHGDKIGDFMPLPGWPLWKSNENASACFSDDGFPYGIYTQAVNLTTKHSIVTRYTYSLFWGFQQISTLAGNQTPSYFLWEVIFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEYLRRQVRQAERYNWAATRGVNEEMLMENLPEDLQREIRRHLFKFIKNIHIFSKMGDSKMGDTILDAICERLRQKTYIMGSKILCHGGLIEKMVFIVRGQMSSIGVATPLGEWDVCGEELLAWCIENSSVNKDGKKIRFPGQRLLSNRDVVCLTNVEAFILRAADIEEVTGIFSRFLRNPKVQGAIRYQSPYWRTFAATRIQVVWRYRKKCLSRANTSNTQFNSL* 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 16524938 16681799 - Vvi17g994 Vvi17g994 779691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g994 775 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 15 767 - -
Vvi17g994 775 MobiDBLite consensus disorder prediction 1 19 - -
Vvi17g994 775 SUPERFAMILY Voltage-gated potassium channels 197 530 - -
Vvi17g994 775 MobiDBLite consensus disorder prediction 41 55 - -
Vvi17g994 775 Gene3D - 203 523 - -
Vvi17g994 775 SUPERFAMILY cAMP-binding domain-like 529 726 IPR018490 -
Vvi17g994 775 Gene3D Jelly Rolls 608 725 IPR014710 -
Vvi17g994 775 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 15 767 - -
Vvi17g994 775 MobiDBLite consensus disorder prediction 1 55 - -
Vvi17g994 775 Pfam Ion transport protein 205 529 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi17g994 775 Gene3D Helix hairpin bin 524 593 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g994 K05391 - vvi:100257953 1573.53