Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g996 ATGAAGTCTATTAAACCCTTTTTAAGGGATCAGTTATTTATTCAACTCGAACAGCTGGAAAGCTACCCCACCAAATTGACTGGCCAAGCTGGTGTTTTGATTCTCCACGATCCGAATATTGGAGATAATTGGTATTGGAATTCAGAGCTCTGCCATTTTGCAATGGAGTCTCCTTTAGTTCTAGGTGTTACTGTGGCAACTGCTGCCTTGGGAGGTAGATATATGATTAGAGCGTGGCAAGCATTCAAAGCTCGCCCTTCAGTTCCTCATATTCGAAGATTTTATGAGGGTGGTTTTCAGCATTCCATGACGAGGCGTGAGGCAGCATTAATTCTCGGTGTCAGAGAACATGCTGTGGTGGAGAAGATCAAGGAGGCTCACAGGAGAGTGATGGTGGCAAACCACCCTGATAGCGGTGGAAGCCATTATCTGGCTTCCAAGATAAATGAAGCCAAGGATGTCTTAATGGGGAGAGCTAAGGGAACTGGTTCTGCATTCTAA 501 45.11 MKSIKPFLRDQLFIQLEQLESYPTKLTGQAGVLILHDPNIGDNWYWNSELCHFAMESPLVLGVTVATAALGGRYMIRAWQAFKARPSVPHIRRFYEGGFQHSMTRREAALILGVREHAVVEKIKEAHRRVMVANHPDSGGSHYLASKINEAKDVLMGRAKGTGSAF* 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 16741314 16749308 + Vvi17g996 Vvi17g996 779693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g996 166 Gene3D DnaJ domain 93 160 IPR036869 -
Vvi17g996 166 SUPERFAMILY Chaperone J-domain 97 157 IPR036869 -
Vvi17g996 166 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM14-3-LIKE 55 166 - -
Vvi17g996 166 CDD DnaJ 111 155 IPR001623 -
Vvi17g996 166 SMART dnaj_3 106 160 IPR001623 -
Vvi17g996 166 ProSiteProfiles dnaJ domain profile. 107 160 IPR001623 -
Vvi17g996 166 PANTHER UNCHARACTERIZED 55 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g996 K09539 DNAJC19; DnaJ homolog subfamily C member 19 - vvi:100256333 225.328
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g996 . . Bda06g00852 . . . . Bma12g01207 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo15g00034 . . Bpe07g01073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002486 3 2 1 4 3 2 1 2 1 2 1 2 2 2 2 1 2 3 2 1 2 2 2 2 2 1 2 3 2 3 60