Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1 ATGTCTAACGCTGTGGCGAATGGTCTGGCGGGAGCTGGAGCTGGTATAATTGCTCAGATTATCACTTATCCCCTCCAAACGGTGAATACCCGTCAACAAACGGAGAGAGTCGCCAAGAAAGTGGCCCCATCCCGCCCCGCATCTAGCACGCTTCTTCAGATTCTACAGGTCATAAGAAGTGAAGGTTGGGGAGGACTATACAGCGGCCTTAAGCCTTCCTTGTTTGGAACTGCTGCTTCACAGGGTATTTATTACTATTTTTATCAGGTTTTCAAAAACAAGGCTGAGGCCATTGCAACTGCCAATAGAGCCAAAGGACGTGGGGATGGTACTGTTGGCATCTTTGCTTGGATTATTGTGGCAGCTTTTGCTGGGTCCTTGAATGTATTGCTGACAAACCCTATATGGGTACTTGTGACCCGTATGCAGACGCATACTCAAGCAGAAAGAAAAATCATGGAGGCAAAGAAGGAAGCTCTATTGAAGGAAGCTAGTGAAAGAAATTTGATAGGTTCTCCTAATTTTCAAGACGGACTTGCTAAACTTAATGCAATGAAACCTCTTCCTTATGGGACACTGCATGCGGCACATGAAGTTTATAAAGAAGCAGGAATTACCGGATTCTGGAAAGGCATCATCCCAACACTTATTATGGTGTGCAATCCATCCATCCAGTTTATGATTTATGAGACGTCATTAAAGCATCTAAGGGCAAAACGTGCTGAGAACAAGCAGGGATTAAAAACCGTAACTGCTTTGGAGGTTTTCTTATTAGGGGCCTTGGCAAAACTGGGAGCAACTGTTGCAACGTACCCTTTATTGGTTGTCAAGTCAAGGCTTCAAGCAAAGCAGGAGATTGGTGGGAACATCTCATTAAGATACTCAGGTACATTTGATGCAATAATTAAGATGATCCGTTATGAAGGATTACCAGGATTTTACAAGGGAATGAGCACAAAGATAGTACAGAGTGTTTTTGCAGCTTCTGTACTTTTCATGGTCAAGGAGGAACTAGTAAAGGCCTACTTGGTGCTAGCAGATAAGAGCCGGAAAGTTCTACAGAAATGA 1068 43.73 MSNAVANGLAGAGAGIIAQIITYPLQTVNTRQQTERVAKKVAPSRPASSTLLQILQVIRSEGWGGLYSGLKPSLFGTAASQGIYYYFYQVFKNKAEAIATANRAKGRGDGTVGIFAWIIVAAFAGSLNVLLTNPIWVLVTRMQTHTQAERKIMEAKKEALLKEASERNLIGSPNFQDGLAKLNAMKPLPYGTLHAAHEVYKEAGITGFWKGIIPTLIMVCNPSIQFMIYETSLKHLRAKRAENKQGLKTVTALEVFLLGALAKLGATVATYPLLVVKSRLQAKQEIGGNISLRYSGTFDAIIKMIRYEGLPGFYKGMSTKIVQSVFAASVLFMVKEELVKAYLVLADKSRKVLQK* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4257 27771 - Vvi18g1 Vvi18g1 779704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 94 IPR018108 -
Vvi18g1 355 Gene3D Mitochondrial carrier domain 1 167 IPR023395 -
Vvi18g1 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 235 IPR018108 -
Vvi18g1 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 250 341 IPR018108 -
Vvi18g1 355 PANTHER PEROXISOMAL NICOTINAMIDE ADENINE DINUCLEOTIDE CARRIER 1 349 - -
Vvi18g1 355 Gene3D Mitochondrial carrier domain 179 350 IPR023395 -
Vvi18g1 355 Pfam Mitochondrial carrier protein 4 93 IPR018108 -
Vvi18g1 355 Pfam Mitochondrial carrier protein 249 341 IPR018108 -
Vvi18g1 355 Pfam Mitochondrial carrier protein 112 237 IPR018108 -
Vvi18g1 355 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 349 IPR044712 GO:0006862|GO:0055085
Vvi18g1 355 SUPERFAMILY Mitochondrial carrier 3 337 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1 K13354 SLC25A17, PMP34; solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17 - vvi:100254704 667.922
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g1269 Vvi18g1 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1 . . . . . . Bma04g00311 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1483 . Lsi04g02441 . . . . . Bda11g00988 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005361 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 2 39