Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g10 ATGGCGGGCTCGGCGTCTGTGATGGGTTGCGTGGTAGTGGGTCCTCCTCAACCCCGATGGTCCAGTTTCAGAGAGGACTCTCATCGGAGGACTCCAGCCTCTCGTCGCTCAAATCTCATCATCCTTCGCCCTTCTCCTTCTTCATGTTCCCTCGCTTGCCCTACTTCCACTACTTTTCAATCCCTCATTTCTTCCCGACCTCCGTGGCTACGTGAAGTTGGAAATGGAGGATCAAGATCTTTGAAGAAAAAGAGTAGTTATTGGAATCATTATACTTCCAATGAGCACGTGGCTGAAGCACCTTTATCAAAACAACATAAGTGCATCTCCTGCTTCCTTAACCATCCCCGAAGTTGTTCCAGTATTAAAAGATTTGTGCCAAGAGTCTTCTCTGATAAATCTACATTTCCTTTGTTGAAGCACACCCTTGACAATGTCTCTGTGAAAAGAGTTCGTGTTCTGAATGCGACTGTGGGTCCAGATGAGCCACATGCAGCGAGTACAGCCTGGCCAGATGGCATTCTAGAAAAGCAAGGTCTGGATTTAGTGGATCCTGAAATAGGAAGAGCAGAATTAGAGGGATTTTTATGTTCTGAACTTCCATCTCACCCAAAACTTTATCGAGGACAATTGAAAAATGGATTGCGGTACCTTATTTTACCTAATAAAGTTCCACCAAACAGGTTTGAAGCACACATGGAAGTTCATGTGGGGTCAATTGATGAGGAAGATGATGAGCAAGGCATTGCACATATGATTGAACATGTTGCATTTCTTGGAAGTAAGAAGCGTGAGAAACTTCTTGGGACAGGGGCCCGGTCTAATGCTTATACAGATTTCCATCATACAGTGTTTCACATCCATTCACCAACTAGTACCAAGGACTCTGATGGAGATTTACTACCATTTGTACTCGATGCTTTGAATGAGATTGCTTTCCACCCAAAATTCCTTGCTTCTCGAGTGGAAAAAGAAAGGCGGGCAATACTTTCAGAACTACAGATGATGAACACAATAGAATACCGAGTTGACTGCCAGTTATTACAACATTTGCATTCTGAAAACAAGCTCAGTAAAAGGTTTCCAATTGGACTAGAAGAGCAGATTAAGAAGTGGGATGCAGATAAAATCAGGAAATTCCATGAGCGTTGGTACTTCCCTGCAAATGCAACCTTGTACATTGTGGGGGATATTGATAACATTTCAAAGACAGTTTACCAGATTGAAGCCATCTTTGGACAAACTGGAATGGAAAATGAAACAGCTGCAGCGCCTACTCCCAGTGCATTTGGTGCAATGGCTAGTTTTCTTGTTCCCAAACTCTCAGTTGGACTGGCTGGAAGTTTGTCTCATGATAGGTCACCGATTCCTGTAGATCAATCTAAATTTACTAAAAAGGAAAGACATGCGGTTCGTCCTCCTGTCAAGCACAATTGGTCTCTTCCTGGAAGCAATGAGGATATGAAGTCTCCGCAGATATTTCAGCATGAGTTGCTTCAGAATTTCTCAATTAATATGTTCTGCAAGATTCCTGTCAACAAGGTTCAGACATATGGTGACTTGCGAAATGTTCTGATGAAGAGAATATTCCTTTCCGCTTTGCATTTCCGGATTAATACAAGATACAAGAGTTCCAATCCTCCATTCACCTCAATTGAGTTGGATCATAGTGATTCTGGAAGGGAAGGATGCACTGTCACTACTCTTACAGTAACTGCAGAACCCAAGAACTGGCAAAGTGCAATTAAAGTTGCTGTTCAAGAGGTTCGAAGGCTTAAAGAGTTTGGTGTCACAAAAGGTGAATTAGCTCGCTATTTGGACGCTCTACTAAAAGATAGTGAACAGTTGGCGGCCATGATTGATAATGTGTCATCAGTGGATAATTTGGACTTTATTATGGAGAGTGATGCACTGGGCCACATGGTGATGGATCAGAGACAGGGACATGAGAGTTTGGTTGCTGTTGCTGGAACAGTTACCCTTGAAGAAGTCAATTCTACTGGTGCTAAGGTGCTAGAATTCATCTCTGATTTTGGAAAACCTACTGCACCTCTTCCTGCTGCTATTGTCGCCTGTGTTCCAACAAAAGTGCATGTTGAGGGTAGTGGTGAAATTGAGTTCAAGATATCTCCAATTGAGATCACAGATGCCATAAAAGCAGGTTTGGAGGAACCCATTGAGGCTGAGCCAGAGCTTGAGGTACCAAAAGAACTGATATCTTCATCACAGCTACAGAAATTAAGGGTAGAGCGAAGTCCGTCTTTTATTCCTCTATCTCCAGAAGTAAATGTCACAAAAGTGTATGACAATGAAACAGGAATCACTCAGCTCCGTCTTTCAAATGGAATTCCTGTAAACTACAAGATATCAAGAAATGAAGCTCGAGGGGGTGTAATGCGGCTTATAGTTGGTGGTGGCCGAGCGGCAGAAAGCTTTGAGTCAAGGGGGGCTGTTGTTGTAGGTGTTCGGACCCTTAGTGAGGGCGGTCGTGTTGGCAACTTTTCCAGAGAGCAGGTTGAACTTTTCTGTGTGAATCACCTGATAAATTGCTCTTTGGAGTCCACTGAAGAATTTATTTGTATGGAATTCCGTTTTACTCTAAGAGACAATGGGATGCGTGCAGCTTTCCAGCTACTCCATATGGTGCTTGAGCATAGTGTATGGCTGGATGATGCATTTGATAGAGCAAGGCAATTATATTTGTCATATTACCGGTCCATTCCCAAAAGCTTAGAACGATCCACGGCTCACAAGCTCATGTTAGCAATGTTGAATGGAGATGAGCGATTTGTTGAACCTAGTCCAAAATCATTACAGAATCTGACATTGCAGTCAGTAAAGGATGCAGTGATGAATCAGTTTGTTGGTGATAACATGGAGGTAAGTGTGGTTGGGGACTTCTCAGAGGAGGATATCGAATCTTGTATTCTTGATTACATGGGGACAGTTAGAGCATCAAGAGATTCTGAGATAGAGCAACAATCTAGCTCAATCATGTTTCGGTCATATCCATCTGATTTGCAGTTTCAACAAGTCTTCTTGAAGGATACTGATGAAAGAGCATGTGCATATATTGCTGGCCCTGCACCCAACCGTTGGGGTTTCACCATTGAAGGAAAAGACCTTTTTGAGTCTATCAATAATATCTCAGTTGATGATGATGAAGAGCCACAATCTGAGTCACTCTCAGAGATGAAGGATTGCAGAAAGGATCTTCAAAGAAAACTCCGCAATCATCCACTTTTCTTTGGCATCACAATGGGGCTGTTGGCCGAGATCATAAACTCTAGGCTATTTACAACAGTCAGGGATTCTCTTGGATTGACATATGATGTATCTTTTGAGTTAAGTCTCTTTGATAGGCTTAAGCTTGGGTGGTATGTGATATCCGTAACATCAACTCCAGGCAAGGTATATAAAGCTGTTGATGCTTGCAAGAACGTCCTTAGAGGTTTGCATAGCAGCAAGATTGCCCAAAGGGAGTTAGACAGGGCAAAACGGACCCTGCTGATGAGACATGAAGCTGAAACCAAGGCAAACGCCTATTGGCTGGGATTGTTGGCTCATTTACAAGCTTCCACTGTTCCAAGGAAGGACATATCATGCATTAAAGATCTCACGTCGCTTTATGAAGCTGCCACTATTGAGGACATATACCTTGCATATGAACAGTTGAAGGTAGATGAAAATTCCTTGTATTCATGTATTGGTATTGCGGGGGCTCAGGCTGCTGAAGAAATTTCTGTAGAAGAGGAAGAGTCAGATGAAGGCCTACAGGGAGTCATTCCTGCAGGGCGTGGTTTATCTACGATGACACGGCCAACAACATGA 3831 43.04 MAGSASVMGCVVVGPPQPRWSSFREDSHRRTPASRRSNLIILRPSPSSCSLACPTSTTFQSLISSRPPWLREVGNGGSRSLKKKSSYWNHYTSNEHVAEAPLSKQHKCISCFLNHPRSCSSIKRFVPRVFSDKSTFPLLKHTLDNVSVKRVRVLNATVGPDEPHAASTAWPDGILEKQGLDLVDPEIGRAELEGFLCSELPSHPKLYRGQLKNGLRYLILPNKVPPNRFEAHMEVHVGSIDEEDDEQGIAHMIEHVAFLGSKKREKLLGTGARSNAYTDFHHTVFHIHSPTSTKDSDGDLLPFVLDALNEIAFHPKFLASRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNISKTVYQIEAIFGQTGMENETAAAPTPSAFGAMASFLVPKLSVGLAGSLSHDRSPIPVDQSKFTKKERHAVRPPVKHNWSLPGSNEDMKSPQIFQHELLQNFSINMFCKIPVNKVQTYGDLRNVLMKRIFLSALHFRINTRYKSSNPPFTSIELDHSDSGREGCTVTTLTVTAEPKNWQSAIKVAVQEVRRLKEFGVTKGELARYLDALLKDSEQLAAMIDNVSSVDNLDFIMESDALGHMVMDQRQGHESLVAVAGTVTLEEVNSTGAKVLEFISDFGKPTAPLPAAIVACVPTKVHVEGSGEIEFKISPIEITDAIKAGLEEPIEAEPELEVPKELISSSQLQKLRVERSPSFIPLSPEVNVTKVYDNETGITQLRLSNGIPVNYKISRNEARGGVMRLIVGGGRAAESFESRGAVVVGVRTLSEGGRVGNFSREQVELFCVNHLINCSLESTEEFICMEFRFTLRDNGMRAAFQLLHMVLEHSVWLDDAFDRARQLYLSYYRSIPKSLERSTAHKLMLAMLNGDERFVEPSPKSLQNLTLQSVKDAVMNQFVGDNMEVSVVGDFSEEDIESCILDYMGTVRASRDSEIEQQSSSIMFRSYPSDLQFQQVFLKDTDERACAYIAGPAPNRWGFTIEGKDLFESINNISVDDDEEPQSESLSEMKDCRKDLQRKLRNHPLFFGITMGLLAEIINSRLFTTVRDSLGLTYDVSFELSLFDRLKLGWYVISVTSTPGKVYKAVDACKNVLRGLHSSKIAQRELDRAKRTLLMRHEAETKANAYWLGLLAHLQASTVPRKDISCIKDLTSLYEAATIEDIYLAYEQLKVDENSLYSCIGIAGAQAAEEISVEEEESDEGLQGVIPAGRGLSTMTRPTT* 1277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 178836 216959 - Vvi18g10 Vvi18g10 779713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g10 1276 Gene3D - 201 421 - -
Vvi18g10 1276 SUPERFAMILY LuxS/MPP-like metallohydrolase 203 412 IPR011249 GO:0046872
Vvi18g10 1276 Pfam Peptidase M16 inactive domain 371 609 IPR007863 -
Vvi18g10 1276 Pfam Peptidase M16 inactive domain 940 1169 IPR007863 -
Vvi18g10 1276 Gene3D - 777 988 - -
Vvi18g10 1276 PANTHER NARDILYSIN 157 1222 - -
Vvi18g10 1276 SUPERFAMILY LuxS/MPP-like metallohydrolase 763 985 IPR011249 GO:0046872
Vvi18g10 1276 SUPERFAMILY LuxS/MPP-like metallohydrolase 1088 1231 IPR011249 GO:0046872
Vvi18g10 1276 MobiDBLite consensus disorder prediction 1252 1276 - -
Vvi18g10 1276 Gene3D - 488 673 - -
Vvi18g10 1276 Pfam Insulinase (Peptidase family M16) 223 353 IPR011765 -
Vvi18g10 1276 Gene3D - 1077 1232 - -
Vvi18g10 1276 PANTHER STROMAL PROCESSING PEPTIDASE, CHLOROPLASTIC-RELATED 157 1222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g10 K25894 SPP; stromal processing peptidase, chloroplastic [EC:3.4.24.-] - vvi:100266746 2506.48
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g10 . . . . . . . . . Cmo12g00648 . . . Car12g00685 . . Cpe07g00604 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00715 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006995 1 1 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 37