Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g100 ATGATTGAGAAGAAGCAGAAGAAGTTTCTTACTGTGGCACCATTTGAGTGTGCCTGGCGCAAGGACCTGAGGTTTCGGGAAGCTGGGCGAGGCTGTGTGGCATTCGAAGCTTTTGCTCACAATGATGTCACGTTGGTTTTTCGGGAGAGTGTGGGAAGTCAGCACTACCATTATAAAAGGGATAACAGTCCACACTATACGGTAATTCTTGGTAGTCATCGGAATCGGAGATTGAAAATTGAGGTGGATGGGAAGACTGTGGTTGATGTGGCAGGGATCGGGCTTTGTTGTTCTTCGGCATTTCAGAGCTATTGGATCAGTATCTATGATGGTTTGATTAGTATTGGCAAAGGAAGATACCCTTTTCAGAATCTTGTGTTTCAGTGGCTTGATTCCAACCCCAATTGTAGTGTTCAGTATGTTGGCCTAAGTAGTTGGGATAAACATGTGGGTTATAGAAATGTCAATGTATTGCCATTAACCCATAACCATATATCCCTGTGGCAGCACGATGAGTATGTGAGCTATGAAAAATGGGGACTCGAAAATTTTCTTGAGAGTTGGGAACTATCTGATATGTTCTTCATTGTTGGTTTGGAGGAAAGGGCTGTACCGGCTCACAAGGTTATCTTGGGGGCATCTGGTAATTTTTCTTTCACTTCAGCAGATGAAGAGGTTGTCCAGCTCCCAGGGGTAACCTACCCAGTTCTTCATGCATTCCTTCAATATATCTATACGGGCCAGACCCAGATTCCAGAGTCACAACTTGTATCCCTGAGGGCTCTGAGCTTACAATTTGAAGTGATGCCATTGCTGAAGCAGTGTGAAGAGATTATTGAACGTTTTAAACTGAATAAGAAATTATTTGACTCGGGTAAGAATGTTGAGATATCATATCCAAATGCTTGGCCCCATTGCTGTACATCTTTCCCATCTGGACTCCCTGTGAATATGCCGAGGCTCAAAAAATTGCATTTTACTGGAAAGTACTGTGATGTGGACATCTACATTGAGGGTCATGGTCTTGTTGCACAGCCACATAGAATTATCCTTGGTTTATGGAGTGCTCCATTTGCAAAGATGTTCACAAATGGAATGAGTGAGAGCATTTCCTCAAAGGTTTGCCTAAGGGATGTGTCGCCACAAGCATTCAATGCTATGCTTGAATTCATGTATAGTGGCAAACTCGATATAGATGATACCATGGACACGGGGACTTTGTTACTCCAGCTTCTTCTATTGGCAGATCAATTTGGTGTTGCTCTCTTGCATCAGGAATGCTGCAAAACTCTTTTAGAATGCCTATCAGAGGACTCAGTATGTCCAATTCTCCAAGTGGTTTCATCAGTTCTGTCATGTAAACTTATTGAAGAAACATGCCTGAGGAAATTTTCAACACACTTCGATTATTACACAACTGCAAGCATTGACTTCATCTTGTTAGATCAGACAACTTTTTGCAGTATTATTCAGCATCCAGATCTGACTGTAACGTCTGAGGAAAGAGTTCTCAATGCAATCTTATTGTGGTGTATGCAAGCAAAGGAATTGCATGGGTGGGAGGTAGTGGATGAACTCATAACATATTCAACTCCTGAACTCCTTTTCAGAGAGAGGCTTCACTCAGTCATTGATTTGTTGCCATTCATACGGTTTCCATTACTGCCATATCCCTTGCTCAAGAAGTTGGAGAAGAGCAGCCTTAGCAGACAGATTCCGGTTTTTGATGATCTTGTAAAGGAGGCAATCAATTATGTAGAATTTGGATTGGCAAGGCCAGAAAATGACCAGTATGCAAGATTTCAACATAGGCGATCTAGCTTTAAGGAGCTCCAGTACATATGTGATGGGGACAGCAATGGAGTTCTGCACTTTGCAGGCACATCATATGGGGAACATCAGTGGGTAAATCCCATTCTAGCCAAGAGGATTACTATTACTGCAAGCAGTCCAACTTCGAGACATACTGACCCAAAGGTTCTAGTCTCAAGGACTTATCAGGGAACATCTTTCACTGGGCCTCGAGTTGAAGATGGGAAGAACTGTTCATGGTGGATGGTTGACATTGGCGAAGATCACCAGCTTATGTGCAACTATTACACCTTGAGACAGGATGGATCGAGAGCCTATATTAGATTTTGGAATCTTCAGGGGTCGTTGGATGGGAAAGCTTGGACAAACTTGAGAGTACATGAGAATGATCAGACAATGTGCAAGCCCGGTCAGTATGCATCATGGCCTATAATGGCACCGAATGCTCTACTTCCCTTCAGATTCTTTAGGGTTATTCTGACAGGTCCCACCTCTGATGCTTCTAACCCCTGGAACTTCTGCATTTGCTTCCTGGAACTGTACGGCTACTTCCACTAA 2370 43.12 MIEKKQKKFLTVAPFECAWRKDLRFREAGRGCVAFEAFAHNDVTLVFRESVGSQHYHYKRDNSPHYTVILGSHRNRRLKIEVDGKTVVDVAGIGLCCSSAFQSYWISIYDGLISIGKGRYPFQNLVFQWLDSNPNCSVQYVGLSSWDKHVGYRNVNVLPLTHNHISLWQHDEYVSYEKWGLENFLESWELSDMFFIVGLEERAVPAHKVILGASGNFSFTSADEEVVQLPGVTYPVLHAFLQYIYTGQTQIPESQLVSLRALSLQFEVMPLLKQCEEIIERFKLNKKLFDSGKNVEISYPNAWPHCCTSFPSGLPVNMPRLKKLHFTGKYCDVDIYIEGHGLVAQPHRIILGLWSAPFAKMFTNGMSESISSKVCLRDVSPQAFNAMLEFMYSGKLDIDDTMDTGTLLLQLLLLADQFGVALLHQECCKTLLECLSEDSVCPILQVVSSVLSCKLIEETCLRKFSTHFDYYTTASIDFILLDQTTFCSIIQHPDLTVTSEERVLNAILLWCMQAKELHGWEVVDELITYSTPELLFRERLHSVIDLLPFIRFPLLPYPLLKKLEKSSLSRQIPVFDDLVKEAINYVEFGLARPENDQYARFQHRRSSFKELQYICDGDSNGVLHFAGTSYGEHQWVNPILAKRITITASSPTSRHTDPKVLVSRTYQGTSFTGPRVEDGKNCSWWMVDIGEDHQLMCNYYTLRQDGSRAYIRFWNLQGSLDGKAWTNLRVHENDQTMCKPGQYASWPIMAPNALLPFRFFRVILTGPTSDASNPWNFCICFLELYGYFH* 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 937801 944696 + Vvi18g100 Vvi18g100 779803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g100 789 SUPERFAMILY POZ domain 173 279 IPR011333 -
Vvi18g100 789 ProSiteProfiles BTB domain profile. 331 400 IPR000210 GO:0005515
Vvi18g100 789 Gene3D Potassium Channel Kv1.1; Chain A 178 295 IPR011333 -
Vvi18g100 789 Pfam BTB/POZ domain 323 433 IPR000210 GO:0005515
Vvi18g100 789 Pfam BTB/POZ domain 182 281 IPR000210 GO:0005515
Vvi18g100 789 ProSiteProfiles BTB domain profile. 191 253 IPR000210 GO:0005515
Vvi18g100 789 SMART BACK_2 441 564 IPR011705 -
Vvi18g100 789 Gene3D - 470 586 - -
Vvi18g100 789 Pfam F5/8 type C domain 645 769 IPR000421 -
Vvi18g100 789 Pfam Farnesoic acid 0-methyl transferase 53 150 IPR022041 -
Vvi18g100 789 Pfam BTB And C-terminal Kelch 447 516 IPR011705 -
Vvi18g100 789 PANTHER OS05G0345500 PROTEIN 1 789 - -
Vvi18g100 789 Gene3D - 639 787 - -
Vvi18g100 789 CDD BTB_POZ_ZBTB_KLHL-like 190 266 - -
Vvi18g100 789 SUPERFAMILY POZ domain 312 432 IPR011333 -
Vvi18g100 789 CDD BTB_POZ_ZBTB_KLHL-like 330 402 - -
Vvi18g100 789 SUPERFAMILY Galactose-binding domain-like 632 788 IPR008979 -
Vvi18g100 789 SMART BTB_4 331 435 IPR000210 GO:0005515
Vvi18g100 789 SMART BTB_4 191 283 IPR000210 GO:0005515
Vvi18g100 789 Gene3D Potassium Channel Kv1.1; Chain A 319 469 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g100 - - - vvi:100249666 1575.45
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g100 Blo01g01634 Blo12g00855 . Bda03g00318 Bpe02g00311 Bpe04g00279 Bma04g00286 . . . . Cma09g00057 . . . Cpe06g00025 . . . . . . . . . . . . . . . Cone4ag2017 Cone7ag1933 . . Lsi04g01803 Csa04g02697 . . . . . . . . . . Sed01g2438 . Cmo09g00058 . . . Car09g00049 . . Bhi09g02894 Tan01g5102 Cmetu07g0710 . Hepe01g2337 Mch11g0535 . Cla11g01820 Cam11g1886 Cec11g1911 Cco11g1918 Clacu11g2050 Cmu11g1855 Cre11g2260 . . Chy07g00388 Cme07g00059
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008391 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 2 1 30