Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1003 ATGGCTTTCTTCAAAGTTCTCTCTAGCTTTTTCATGCTGACGGCTTTCCATTCTTCCACATTCTCCCTTGCCCACCCTGGTGTTGATTTTGGCTGGGATGGTAGCTTCCATCCCGGAGGAGGGTTTTCTGGTCTCTTTCCAGGCTTCTATCAGTGCTCATGCCCTCAAGCTAACGACATTGTCCTGTCAGTCTTGGAGAAAGCCATTGCAAAAGAGCCCAGGATGGCTGCCTCTCTCCTTAGGCTTCACTTCCATGACTGTTTTGTGCAGGGCTGTGATGCATCCATCTTGTTGGACGATAGTGCAAGCATAGTCAGCGAAAAGGGGTCAGGGCCGAACAAGAACTCAATTAGAGGATTTGAAGTGATCGATGAGATCAAGGCCAAGTTGGAAGAAGCATGCCCCCAGACTGTTTCTTGTGCAGACATTCTAGCCCTTGCCGCACGTGGCTCCACTGTACTAAGCGGTGGACCATTTTGGGAGCTTCCACTGGGGAGGAGGGACTCAAAAACAGCAAGTCTTACTGGCTCAAACAACAACATTCCTGCCCCAAACTCCACACTTCAAAACCTCATAACACTCTTCAAACGCCAAGGCCTAGATGAAGTTGACCTTGTTGCCCTCTCTGGTGTGGCACACGATTGGAATGGCAAGATGCGTGACCTTCAAGCAGAGGTTGTATAA 684 49.56 MAFFKVLSSFFMLTAFHSSTFSLAHPGVDFGWDGSFHPGGGFSGLFPGFYQCSCPQANDIVLSVLEKAIAKEPRMAASLLRLHFHDCFVQGCDASILLDDSASIVSEKGSGPNKNSIRGFEVIDEIKAKLEEACPQTVSCADILALAARGSTVLSGGPFWELPLGRRDSKTASLTGSNNNIPAPNSTLQNLITLFKRQGLDEVDLVALSGVAHDWNGKMRDLQAEVV* 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11184160 11185662 - Vvi18g1003 Vvi18g1003 780706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1003 227 PRINTS Haem peroxidase superfamily signature 76 90 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g1003 227 PRINTS Haem peroxidase superfamily signature 138 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g1003 227 PRINTS Haem peroxidase superfamily signature 156 168 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g1003 227 Gene3D - 49 181 - -
Vvi18g1003 227 ProSitePatterns Peroxidases active site signature. 76 87 IPR019794 GO:0004601
Vvi18g1003 227 Pfam Peroxidase 63 210 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g1003 227 PRINTS Plant peroxidase signature 54 73 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1003 227 PRINTS Plant peroxidase signature 78 98 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1003 227 PRINTS Plant peroxidase signature 118 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1003 227 PRINTS Plant peroxidase signature 137 147 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1003 227 PRINTS Plant peroxidase signature 156 171 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1003 227 PRINTS Plant peroxidase signature 203 215 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi18g1003 227 SUPERFAMILY Heme-dependent peroxidases 45 210 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi18g1003 227 Gene3D Peroxidase, domain 2 182 211 - -
Vvi18g1003 227 ProSiteProfiles Plant heme peroxidase family profile. 44 213 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi18g1003 227 PANTHER PEROXIDASE 9 45 211 - -
Vvi18g1003 227 PANTHER PEROXIDASE 72-RELATED 45 211 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g1045 Vvi18g1003 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1003 K00430 - vvi:100242093 408.683