Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g1003 | ATGGCTTTCTTCAAAGTTCTCTCTAGCTTTTTCATGCTGACGGCTTTCCATTCTTCCACATTCTCCCTTGCCCACCCTGGTGTTGATTTTGGCTGGGATGGTAGCTTCCATCCCGGAGGAGGGTTTTCTGGTCTCTTTCCAGGCTTCTATCAGTGCTCATGCCCTCAAGCTAACGACATTGTCCTGTCAGTCTTGGAGAAAGCCATTGCAAAAGAGCCCAGGATGGCTGCCTCTCTCCTTAGGCTTCACTTCCATGACTGTTTTGTGCAGGGCTGTGATGCATCCATCTTGTTGGACGATAGTGCAAGCATAGTCAGCGAAAAGGGGTCAGGGCCGAACAAGAACTCAATTAGAGGATTTGAAGTGATCGATGAGATCAAGGCCAAGTTGGAAGAAGCATGCCCCCAGACTGTTTCTTGTGCAGACATTCTAGCCCTTGCCGCACGTGGCTCCACTGTACTAAGCGGTGGACCATTTTGGGAGCTTCCACTGGGGAGGAGGGACTCAAAAACAGCAAGTCTTACTGGCTCAAACAACAACATTCCTGCCCCAAACTCCACACTTCAAAACCTCATAACACTCTTCAAACGCCAAGGCCTAGATGAAGTTGACCTTGTTGCCCTCTCTGGTGTGGCACACGATTGGAATGGCAAGATGCGTGACCTTCAAGCAGAGGTTGTATAA | 684 | 49.56 | MAFFKVLSSFFMLTAFHSSTFSLAHPGVDFGWDGSFHPGGGFSGLFPGFYQCSCPQANDIVLSVLEKAIAKEPRMAASLLRLHFHDCFVQGCDASILLDDSASIVSEKGSGPNKNSIRGFEVIDEIKAKLEEACPQTVSCADILALAARGSTVLSGGPFWELPLGRRDSKTASLTGSNNNIPAPNSTLQNLITLFKRQGLDEVDLVALSGVAHDWNGKMRDLQAEVV* | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 11184160 | 11185662 | - | Vvi18g1003 | Vvi18g1003 | 780706 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g1003 | 227 | PRINTS | Haem peroxidase superfamily signature | 76 | 90 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Vvi18g1003 | 227 | PRINTS | Haem peroxidase superfamily signature | 138 | 155 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Vvi18g1003 | 227 | PRINTS | Haem peroxidase superfamily signature | 156 | 168 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Vvi18g1003 | 227 | Gene3D | - | 49 | 181 | - | - | |
Vvi18g1003 | 227 | ProSitePatterns | Peroxidases active site signature. | 76 | 87 | IPR019794 | GO:0004601 | |
Vvi18g1003 | 227 | Pfam | Peroxidase | 63 | 210 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Vvi18g1003 | 227 | PRINTS | Plant peroxidase signature | 54 | 73 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Vvi18g1003 | 227 | PRINTS | Plant peroxidase signature | 78 | 98 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Vvi18g1003 | 227 | PRINTS | Plant peroxidase signature | 118 | 131 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Vvi18g1003 | 227 | PRINTS | Plant peroxidase signature | 137 | 147 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Vvi18g1003 | 227 | PRINTS | Plant peroxidase signature | 156 | 171 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Vvi18g1003 | 227 | PRINTS | Plant peroxidase signature | 203 | 215 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Vvi18g1003 | 227 | SUPERFAMILY | Heme-dependent peroxidases | 45 | 210 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
Vvi18g1003 | 227 | Gene3D | Peroxidase, domain 2 | 182 | 211 | - | - | |
Vvi18g1003 | 227 | ProSiteProfiles | Plant heme peroxidase family profile. | 44 | 213 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Vvi18g1003 | 227 | PANTHER | PEROXIDASE 9 | 45 | 211 | - | - | |
Vvi18g1003 | 227 | PANTHER | PEROXIDASE 72-RELATED | 45 | 211 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi4g1045 | Vvi18g1003 | ECH |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g1003 | K00430 | - | vvi:100242093 | 408.683 |